Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0015
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P46737 Cluster: BRCA1/BRCA2-containing complex subunit ...    35   1.5  
UniRef50_P46736 Cluster: BRCA1/BRCA2-containing complex subunit ...    35   1.5  

>UniRef50_P46737 Cluster: BRCA1/BRCA2-containing complex subunit 3;
           n=39; Eumetazoa|Rep: BRCA1/BRCA2-containing complex
           subunit 3 - Mus musculus (Mouse)
          Length = 291

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 538 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 446
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>UniRef50_P46736 Cluster: BRCA1/BRCA2-containing complex subunit 3;
           n=10; Amniota|Rep: BRCA1/BRCA2-containing complex
           subunit 3 - Homo sapiens (Human)
          Length = 316

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 538 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 446
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,575,423
Number of Sequences: 1657284
Number of extensions: 11005530
Number of successful extensions: 25395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25392
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)