SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A04
         (963 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18...   153   5e-36
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51...   153   6e-36
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati...   105   1e-21
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ...   103   5e-21
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta...   102   1e-20
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ...    99   1e-19
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati...    97   4e-19
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu...    92   2e-17
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;...    92   2e-17
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;...    91   4e-17
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w...    89   1e-16
UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:...    77   7e-13
UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein polypep...    71   4e-11
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ...    69   1e-10
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ...    63   9e-09
UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiell...    62   2e-08
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei...    57   6e-07
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C...    48   4e-04
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep...    45   0.003
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta...    45   0.003
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T...    44   0.006
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)...    44   0.008
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A...    43   0.010
UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to ENSANGP000...    43   0.013
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta...    43   0.013
UniRef50_Q8SSF1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN E; n=1;...    42   0.018
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ...    42   0.018
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C...    42   0.031
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ...    41   0.041
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n...    41   0.054
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M...    41   0.054
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful...    40   0.072
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th...    40   0.072
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei...    40   0.072
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei...    40   0.13 
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S...    39   0.17 
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei...    39   0.17 
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm...    39   0.17 
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ...    39   0.22 
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory...    39   0.22 
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati...    38   0.29 
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ...    38   0.29 
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46...    38   0.29 
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic...    38   0.38 
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere...    38   0.38 
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T...    38   0.38 
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae...    38   0.38 
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1...    38   0.51 
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida...    38   0.51 
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein...    37   0.67 
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm...    37   0.67 
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu...    37   0.67 
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm...    36   1.2  
UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila melanog...    36   1.2  
UniRef50_Q0U170 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ...    36   1.5  
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm...    36   1.5  
UniRef50_Q9L9N8 Cluster: ORF06; n=9; Borrelia burgdorferi group|...    36   2.0  
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm...    36   2.0  
UniRef50_Q90643 Cluster: Interferon regulatory factor 3; n=4; Ga...    36   2.0  
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm...    35   3.6  
UniRef50_Q247T3 Cluster: Putative uncharacterized protein; n=1; ...    35   3.6  
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A...    35   3.6  
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei...    35   3.6  
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei...    34   4.7  
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot...    34   4.7  
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe...    34   4.7  
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w...    34   4.7  
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E...    34   4.7  
UniRef50_Q8Z615 Cluster: Putative uncharacterized protein STY204...    34   6.2  
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;...    34   6.2  
UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1; ...    34   6.2  
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ...    34   6.2  
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni...    34   6.2  
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog...    34   6.2  
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T...    34   6.2  
UniRef50_Q8ILD6 Cluster: Putative uncharacterized protein; n=2; ...    33   8.2  
UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of s...    33   8.2  

>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
           Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
           rerio (Zebrafish) (Brachydanio rerio)
          Length = 92

 Score =  153 bits (372), Expect = 5e-36
 Identities = 70/88 (79%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
 Frame = +2

Query: 143 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 319
           MAY+G   KVQKVMVQPINLIFRYLQNRSR+ +WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1   MAYRGQGQKVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60

Query: 320 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           AEEVHMK+KNRK +GRIM+KGDNITL+Q
Sbjct: 61  AEEVHMKTKNRKPLGRIMLKGDNITLLQ 88


>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
           Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
           sapiens (Human)
          Length = 92

 Score =  153 bits (371), Expect = 6e-36
 Identities = 69/88 (78%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
 Frame = +2

Query: 143 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 319
           MAY+G   KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1   MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60

Query: 320 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61  AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88


>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
           n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
           putative - Theileria parva
          Length = 91

 Score =  105 bits (253), Expect = 1e-21
 Identities = 47/79 (59%), Positives = 61/79 (77%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           K+QK+M QPIN IFR+    +RVQIWL++  N +IEG I GFDEYMN+VLD A EVH+K 
Sbjct: 7   KLQKIMTQPINQIFRFFTGGTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKK 66

Query: 344 KNRKQIGRIMMKGDNITLI 400
             +K +GRI++KGD +TLI
Sbjct: 67  NVKKDVGRILLKGDCMTLI 85


>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
           Dikarya|Rep: Putative uncharacterized protein - Ustilago
           maydis (Smut fungus)
          Length = 136

 Score =  103 bits (248), Expect = 5e-21
 Identities = 45/74 (60%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
 Frame = +2

Query: 173 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 352
           KV VQPIN+IFR+LQ ++RV +WLY+NV+ RIEG I+GFDE+MN+ L +AEEV  K  N+
Sbjct: 6   KVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNK 65

Query: 353 K-QIGRIMMKGDNI 391
           + ++GRI++KGDNI
Sbjct: 66  RVELGRILLKGDNI 79


>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
           putative; n=1; Tetrahymena thermophila SB210|Rep: Small
           nuclear ribonucleoprotein E, putative - Tetrahymena
           thermophila SB210
          Length = 140

 Score =  102 bits (245), Expect = 1e-20
 Identities = 43/80 (53%), Positives = 61/80 (76%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           K  K +  P+  IF +LQ + RVQIWL+EN  +++EG I+GFDEYMN+VLDE  EV  K+
Sbjct: 4   KQTKTITNPLTTIFGFLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKT 63

Query: 344 KNRKQIGRIMMKGDNITLIQ 403
             +++IGRI++KG+NITLI+
Sbjct: 64  NQKREIGRILLKGENITLIR 83


>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 111

 Score = 99.1 bits (236), Expect = 1e-19
 Identities = 45/79 (56%), Positives = 62/79 (78%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           KVQ++M QPI         ++R+QIWL+E  +LRIEG I+GFDEYMN+VLD+AEE+++K 
Sbjct: 5   KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55

Query: 344 KNRKQIGRIMMKGDNITLI 400
             RK +GRI++KGDNITL+
Sbjct: 56  DTRKSLGRILLKGDNITLM 74


>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
           n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
           ribonucleoprotein, putative - Cryptosporidium parvum
           Iowa II
          Length = 92

 Score = 97.5 bits (232), Expect = 4e-19
 Identities = 44/81 (54%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           K QK+M+QPIN IF    ++ RVQIWLY++ NL +EG I GFDEYMNIVLD+A EV+ K 
Sbjct: 8   KTQKMMLQPINQIFHLFTSKQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKK 67

Query: 344 KNRKQ--IGRIMMKGDNITLI 400
           + R++  +G+++++G+NI+LI
Sbjct: 68  EVRRETSVGQLLLRGENISLI 88


>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
           putative; n=12; Pezizomycotina|Rep: Small nuclear
           ribonucleoprotein SmE, putative - Aspergillus clavatus
          Length = 95

 Score = 92.3 bits (219), Expect = 2e-17
 Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
 Frame = +2

Query: 155 GPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVH 334
           G    +K ++ PI+ IF+ LQ R+ V IWLYE +  RIEG I GFDE+MN+V+D+A EV 
Sbjct: 6   GGGAARKTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVR 65

Query: 335 MKSK----NRKQIGRIMMKGDNITLIQ 403
           M +K     R+ +G+I++KGDN++LIQ
Sbjct: 66  MATKTDEEKRRPLGQILLKGDNVSLIQ 92


>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
           Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
           E - Saccharomyces cerevisiae (Baker's yeast)
          Length = 94

 Score = 92.3 bits (219), Expect = 2e-17
 Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 7/83 (8%)
 Frame = +2

Query: 173 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 352
           K MV PIN IF +LQ ++ V IWL+E + +RI+G IVGFDE+MN+V+DEA E+ + S + 
Sbjct: 8   KAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSADG 67

Query: 353 KQ-------IGRIMMKGDNITLI 400
           K+       +G+I++KGDNITLI
Sbjct: 68  KEDVEKGTPLGKILLKGDNITLI 90


>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
           ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
          Length = 89

 Score = 91.1 bits (216), Expect = 4e-17
 Identities = 37/79 (46%), Positives = 59/79 (74%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           K+ K M+ P+  I    +++ RV IWL+EN  LRIEG + GFD+Y+N+VL + EEV++K+
Sbjct: 5   KMTKAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLKT 64

Query: 344 KNRKQIGRIMMKGDNITLI 400
             R++IG I++KG+NI++I
Sbjct: 65  NTRRKIGTILLKGENISVI 83


>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_142,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 95

 Score = 89.4 bits (212), Expect = 1e-16
 Identities = 37/80 (46%), Positives = 58/80 (72%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           K QK + QP++  F     +++++IWL EN NLRI+G + GFDEY+N+VLD A E   K+
Sbjct: 9   KPQKKITQPLHAFFTLFTEKTQLEIWLVENDNLRIQGKLAGFDEYLNLVLDRAVEYDRKT 68

Query: 344 KNRKQIGRIMMKGDNITLIQ 403
           K  K++G+I++KG+NI L++
Sbjct: 69  KATKELGKILLKGENIVLVR 88


>UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:
           SmE protein - Leptomonas collosoma
          Length = 94

 Score = 77.0 bits (181), Expect = 7e-13
 Identities = 27/76 (35%), Positives = 57/76 (75%)
 Frame = +2

Query: 173 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 352
           K+MV+P ++I +++  + RV +WL  + +++IEG+++G+DE+MN+VL +A E + K+K  
Sbjct: 14  KLMVKPSSVIHKFMTTQQRVCVWLVHDAHIKIEGNLLGYDEFMNVVLGDATETNSKTKES 73

Query: 353 KQIGRIMMKGDNITLI 400
             +G+I+++ DN+ ++
Sbjct: 74  THLGKILLRSDNVGVV 89


>UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein
           polypeptide e, putative; n=4; Trypanosomatidae|Rep:
           Small nuclear ribonucleoprotein polypeptide e, putative
           - Leishmania major
          Length = 86

 Score = 70.9 bits (166), Expect = 4e-11
 Identities = 24/74 (32%), Positives = 52/74 (70%)
 Frame = +2

Query: 179 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 358
           M  P  ++ R++Q+  RV +WL  +  +R+EG+++G+DE+MN+VL +  E ++++    +
Sbjct: 8   MENPTGVVHRFMQDHQRVCVWLVHDPQIRLEGNLLGYDEFMNVVLGDTTETNLRNSKSYR 67

Query: 359 IGRIMMKGDNITLI 400
           +G+I+++ DN+ +I
Sbjct: 68  LGKILLRSDNVGVI 81


>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 141

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 29/49 (59%), Positives = 40/49 (81%)
 Frame = +2

Query: 254 VNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           V++ +  H  GFDEYMN+VLDEAEE+++K   RK +GRI++KGDNITL+
Sbjct: 88  VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136



 Score = 66.1 bits (154), Expect = 1e-09
 Identities = 30/50 (60%), Positives = 41/50 (82%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 313
           KVQ++M QPINLIFR+LQ+++R+QIWL+E  +LRIEG I+    Y+N VL
Sbjct: 5   KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51


>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
           G3|Rep: Sm protein - Trichomonas vaginalis G3
          Length = 93

 Score = 63.3 bits (147), Expect = 9e-09
 Identities = 24/71 (33%), Positives = 49/71 (69%)
 Frame = +2

Query: 188 PINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGR 367
           P+ +   YL+ R+R+++ L +N  + +EG+++GFDEYMN+VL ++ EV+ K   R  +G 
Sbjct: 15  PLKIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGT 74

Query: 368 IMMKGDNITLI 400
            +++G+ + ++
Sbjct: 75  SLLRGECVGMV 85


>UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiella
           natans|Rep: MRNA splicing protein - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 80

 Score = 62.5 bits (145), Expect = 2e-08
 Identities = 33/76 (43%), Positives = 51/76 (67%)
 Frame = +2

Query: 167 VQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSK 346
           ++K+MV PINL++RYL  ++ + + L E  N  I G I+GFDEYMNIVL EA   + + +
Sbjct: 1   MKKLMVHPINLLYRYLIGKNIILVCLKEK-NKTINGKIIGFDEYMNIVLSEAVAKNKEVE 59

Query: 347 NRKQIGRIMMKGDNIT 394
             K +  I++KG+ I+
Sbjct: 60  KIKNL--ILVKGNQIS 73


>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
           E; n=1; Guillardia theta|Rep: Putative small nuclear
           ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
          Length = 78

 Score = 57.2 bits (132), Expect = 6e-07
 Identities = 26/74 (35%), Positives = 49/74 (66%)
 Frame = +2

Query: 179 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 358
           M+QPIN +F++L+ ++ V I    + +  +EG+++GFDE+MN+V++   E    S   + 
Sbjct: 1   MIQPINQLFKFLKEKNLVTIIFKGSNDYILEGNLIGFDEFMNLVIENTTE-KKDSLIVRD 59

Query: 359 IGRIMMKGDNITLI 400
           +G +++KGD+I  I
Sbjct: 60  LGYVLIKGDSILTI 73


>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
           Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
           ribonucleoprotein, core - Candidatus Nitrosopumilus
           maritimus SCM1
          Length = 78

 Score = 48.0 bits (109), Expect = 4e-04
 Identities = 19/48 (39%), Positives = 36/48 (75%)
 Frame = +2

Query: 257 NLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           N  I G+++GFD++MN++LD +EE+  + +  K +G I+++GDN+ +I
Sbjct: 25  NKTIRGNLLGFDQHMNLLLDSSEEIPAEGE-AKGLGSIVVRGDNVVMI 71


>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
           polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
           nuclear ribonucleoprotein polypeptide G - Hyacinthus
           orientalis (Common hyacinth)
          Length = 96

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 22/66 (33%), Positives = 42/66 (63%)
 Frame = +2

Query: 206 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
           + +   S++QI L  N N  + G + GFD++MN+V+D   EV+   KN   IG ++++G+
Sbjct: 26  KQVHGTSKLQIKL--NANRVVVGTLRGFDQFMNLVIDNTMEVNGNDKN--DIGMVVIRGN 81

Query: 386 NITLIQ 403
           ++ +I+
Sbjct: 82  SVVMIE 87


>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
           putative; n=3; Eukaryota|Rep: Small nuclear
           ribonucleoprotein B, putative - Theileria parva
          Length = 155

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
 Frame = +2

Query: 224 SRVQIWLYENV------NLRIEGHIVGFDEYMNIVLDEAEEVHM---KSKNRKQI----G 364
           +R+Q WL  NV      N +  G +V +D+YMN+VL + EE  M   K KNR ++    G
Sbjct: 6   TRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLG 65

Query: 365 RIMMKGDNI 391
            ++++G+NI
Sbjct: 66  FVLLRGENI 74


>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
           Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
           Thermoplasma volcanium
          Length = 71

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 25/74 (33%), Positives = 47/74 (63%)
 Frame = +2

Query: 179 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 358
           M+ P+ L+   +  R  V + L +N  L  EG + G+D+YMN+VLD+ +E + ++ +RK 
Sbjct: 1   MIMPMKLLEESVNKR--VSLLLKDNRVL--EGTLTGYDDYMNMVLDDVDE-NSENVSRK- 54

Query: 359 IGRIMMKGDNITLI 400
           +G ++++G N+  I
Sbjct: 55  LGTVVIRGSNVVRI 68


>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
           homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
           ribonucleoprotein (SnRNP) homolog - Methanopyrus
           kandleri
          Length = 73

 Score = 43.6 bits (98), Expect = 0.008
 Identities = 18/45 (40%), Positives = 33/45 (73%)
 Frame = +2

Query: 266 IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           + G +V FD ++N+VLD+  E+   S+ R  +GR++++GD++TLI
Sbjct: 25  LRGRLVSFDGHLNLVLDDCVEIDEDSEVR--LGRVLIRGDSVTLI 67


>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
           AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 80

 Score = 43.2 bits (97), Expect = 0.010
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +2

Query: 182 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKN-RKQ 358
           V P+ +I R +       IW+    N    G +VGFD+++N+V+++  E     +  ++ 
Sbjct: 3   VLPLEIIDRAINQ----PIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRH 58

Query: 359 IGRIMMKGDNITLI 400
            GR+++ G+NIT++
Sbjct: 59  PGRMLLSGNNITVL 72


>UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to
           ENSANGP00000018479; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to ENSANGP00000018479 - Nasonia
           vitripennis
          Length = 225

 Score = 42.7 bits (96), Expect = 0.013
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +2

Query: 122 ESQYKQKMAYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLR--IEGHIVGFDE 295
           + +Y +K      PK     + P+ ++F+Y++NR RV+++      +R  +E ++  FD 
Sbjct: 97  QQRYSEKNVLSRMPKA----LGPLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDR 152

Query: 296 YMNIVLDEAEEVHMKSKNRK 355
           + N+ L++  E+  +   RK
Sbjct: 153 HWNLALEDCLELWTRKVKRK 172


>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
           putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
           protein, putative - Plasmodium falciparum (isolate 3D7)
          Length = 101

 Score = 42.7 bits (96), Expect = 0.013
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 400
           +IW+    +  I G +VGFDEY+N+VL++  E    +  +K  +I ++++ G NIT++
Sbjct: 23  KIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGLNITIM 80


>UniRef50_Q8SSF1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN E; n=1;
           Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
           RIBONUCLEOPROTEIN E - Encephalitozoon cuniculi
          Length = 111

 Score = 42.3 bits (95), Expect = 0.018
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +2

Query: 182 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLD 316
           V P+  I+ +L     V+IW  +++  + +G IVGFDEYMN+V+D
Sbjct: 46  VLPLEKIYDFLSRSIDVEIW-EKDMGAKHKGRIVGFDEYMNVVVD 89


>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
           associated with small nuclear ribonucleoproteins; n=1;
           Aspergillus niger|Rep: Function: snRPG of H. sapiens is
           associated with small nuclear ribonucleoproteins -
           Aspergillus niger
          Length = 105

 Score = 42.3 bits (95), Expect = 0.018
 Identities = 24/81 (29%), Positives = 48/81 (59%)
 Frame = +2

Query: 161 PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMK 340
           P+++K     I +  +Y++ R   Q+    N N ++ G + G+D +MNIVLDEA E   +
Sbjct: 6   PELKKSTEANIAVFQQYMEKRVFCQL----NGNRKVIGILRGYDVFMNIVLDEAFE-EKQ 60

Query: 341 SKNRKQIGRIMMKGDNITLIQ 403
              +  IG I+++G+++ +++
Sbjct: 61  GGEKVAIGMIVIRGNSVVMLE 81


>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
           Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
           ribonucleoprotein, core - Candidatus Nitrosopumilus
           maritimus SCM1
          Length = 80

 Score = 41.5 bits (93), Expect = 0.031
 Identities = 23/76 (30%), Positives = 43/76 (56%)
 Frame = +2

Query: 173 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 352
           K+M   I+ +     ++ +V +    N N  ++G +  FD +MN+ L+ AE+V  +  N 
Sbjct: 2   KIMADEISTLMT--NSKDKVVLLRLRN-NKTVQGTLKDFDIHMNLTLENAEDVSEEKPN- 57

Query: 353 KQIGRIMMKGDNITLI 400
             IG+++++GDNI  I
Sbjct: 58  -PIGKVLLRGDNILAI 72


>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
           G3|Rep: Sm protein - Trichomonas vaginalis G3
          Length = 107

 Score = 41.1 bits (92), Expect = 0.041
 Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
 Frame = +2

Query: 260 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR--KQIGRIMMKGDNITLIQ 403
           L  +G ++ +DE+MN+VL + EE+   ++ R  K+IG ++M+G N++ ++
Sbjct: 24  LSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGCNVSTVE 73


>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 80

 Score = 40.7 bits (91), Expect = 0.054
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = +2

Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNI 391
           QIW+  N      G +VGFD+Y+N+VL+E  E+  +++  ++  R   +  N+
Sbjct: 28  QIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIWYQAETDRRFWRTSKETANM 80


>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
           Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
           - Methanospirillum hungatei (strain JF-1 / DSM 864)
          Length = 80

 Score = 40.7 bits (91), Expect = 0.054
 Identities = 25/72 (34%), Positives = 44/72 (61%)
 Frame = +2

Query: 185 QPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIG 364
           +P++++ + L NR  V I L       I+G + G+D +MN+VLD+AEE+       + IG
Sbjct: 9   RPMDILDQVL-NRQPVLISL--KGGREIKGVLQGYDVHMNLVLDKAEEI--VQGQAQSIG 63

Query: 365 RIMMKGDNITLI 400
            ++++GDN+  I
Sbjct: 64  TLIIRGDNVIYI 75


>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
           fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
          Length = 75

 Score = 40.3 bits (90), Expect = 0.072
 Identities = 25/75 (33%), Positives = 42/75 (56%)
 Frame = +2

Query: 179 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 358
           MV P  ++   +    RV++   EN   ++ G + G D+YMN+ L  A E   + K R  
Sbjct: 1   MVLPNQMVKSMVGKIIRVEMKGEEN---QLVGKLEGVDDYMNLYLTNAMECKGEEKVR-S 56

Query: 359 IGRIMMKGDNITLIQ 403
           +G I+++G+N+ LIQ
Sbjct: 57  LGEIVLRGNNVVLIQ 71


>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
           Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
           Thermoplasma acidophilum
          Length = 83

 Score = 40.3 bits (90), Expect = 0.072
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +2

Query: 257 NLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           N    G + G+D YMNIVL  A E+ +  +N+    R++++GDN+  +
Sbjct: 29  NREYSGILEGYDVYMNIVLQNASEI-INGENKGVYDRVLVRGDNVIFV 75


>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
           G; n=16; Bilateria|Rep: Probable small nuclear
           ribonucleoprotein G - Caenorhabditis elegans
          Length = 77

 Score = 40.3 bits (90), Expect = 0.072
 Identities = 17/51 (33%), Positives = 33/51 (64%)
 Frame = +2

Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           N N R+ G + GFD +MN+V+DEA E + K      +G  +++G+++ +++
Sbjct: 22  NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71


>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
           G; n=14; Eukaryota|Rep: Probable small nuclear
           ribonucleoprotein G - Drosophila melanogaster (Fruit
           fly)
          Length = 76

 Score = 39.5 bits (88), Expect = 0.13
 Identities = 18/66 (27%), Positives = 38/66 (57%)
 Frame = +2

Query: 206 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
           +Y+  R  +++    N    + G + GFD +MN+VLD+  E   K   +  IG ++++G+
Sbjct: 11  KYMDKRMMLKL----NGGRAVTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGN 65

Query: 386 NITLIQ 403
           +I +++
Sbjct: 66  SIVMVE 71


>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
           Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 88

 Score = 39.1 bits (87), Expect = 0.17
 Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 400
           +IW+    +  + G + GFD Y+N+VL++  E  + ++ R+  ++ +I++ G+NI ++
Sbjct: 21  KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78


>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
           Methanosarcina acetivorans
          Length = 74

 Score = 39.1 bits (87), Expect = 0.17
 Identities = 18/59 (30%), Positives = 40/59 (67%)
 Frame = +2

Query: 224 SRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           SR+++ +  ++NL +EG +   D+YMN+ L +  E+ ++ +  + +G ++++G+NI LI
Sbjct: 13  SRIRVEMKGDLNL-LEGTLKSVDDYMNLHLVDTMEI-VRGEKVRSLGSVVLRGNNIILI 69


>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
           n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
           protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 93

 Score = 39.1 bits (87), Expect = 0.17
 Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
 Frame = +2

Query: 257 NLRIEGHIVGFDEYMNIVLDEAEE----VHMKSKNRKQI---GRIMMKGDNITLI 400
           N   EG +VGFD+++N++L++A E       +S+N K +   GR+++ G+NI ++
Sbjct: 27  NREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81


>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
           n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
           ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
          Length = 81

 Score = 38.7 bits (86), Expect = 0.22
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 179 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK- 355
           M +P   +  YL+ R  V+I    +    I G + G+DEYMN+VLDEA +      ++  
Sbjct: 1   MEKPKPELKHYLEKRILVKI----HGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHI 56

Query: 356 QIGRIMMKGDNITLIQ 403
            IG IM+ G++I  ++
Sbjct: 57  PIGMIMILGNSILSVE 72


>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
           oryzae|Rep: Predicted protein - Aspergillus oryzae
          Length = 122

 Score = 38.7 bits (86), Expect = 0.22
 Identities = 17/51 (33%), Positives = 34/51 (66%)
 Frame = +2

Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           N N ++ G + G+D +MNIVLDEA E   +   +  IG ++++G+++ +++
Sbjct: 10  NGNRKVIGILRGYDVFMNIVLDEAFE-EKQGGEKVAIGMVVIRGNSVVMLE 59


>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
           n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 83

 Score = 38.3 bits (85), Expect = 0.29
 Identities = 20/56 (35%), Positives = 37/56 (66%)
 Frame = +2

Query: 227 RVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNIT 394
           R+QI+L  N N ++ G + G+D +MN+VLD   E+  K   +  IG ++++G++I+
Sbjct: 21  RLQIYL--NGNRQVVGILRGYDTFMNLVLDNTMEI--KKDEQIDIGVVVIRGNSIS 72


>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 67

 Score = 38.3 bits (85), Expect = 0.29
 Identities = 16/47 (34%), Positives = 32/47 (68%)
 Frame = +2

Query: 260 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           +R +G +V FDEYMNI+L++ EE  + +  +  +G++ ++ +N+  I
Sbjct: 1   MRYKGTLVSFDEYMNILLNDCEE-WIDNTKKGTLGKVFIRCNNVLYI 46


>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
           Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
           sapiens (Human)
          Length = 76

 Score = 38.3 bits (85), Expect = 0.29
 Identities = 16/51 (31%), Positives = 33/51 (64%)
 Frame = +2

Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           N    ++G + GFD +MN+V+DE  E+   S  +  IG ++++G++I +++
Sbjct: 22  NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71


>UniRef50_Q54HH8 Cluster: Putative small nuclear
           ribonucleoparticle-associated protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative small nuclear
           ribonucleoparticle-associated protein - Dictyostelium
           discoideum AX4
          Length = 257

 Score = 37.9 bits (84), Expect = 0.38
 Identities = 16/49 (32%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
 Frame = +2

Query: 188 PINLIFRYLQNRSRVQIWLYENVNLR--IEGHIVGFDEYMNIVLDEAEE 328
           P++L+ R L+++S++++ +     +R    G+I+ FD++MNI+L + EE
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEE 214


>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
           cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
           hansenii|Rep: Similar to sp|P40089 Saccharomyces
           cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
           (Yeast) (Torulaspora hansenii)
          Length = 93

 Score = 37.9 bits (84), Expect = 0.38
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = +2

Query: 269 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           +G ++GFD+Y+N+VL+  EE   +    K I ++++ G  + ++
Sbjct: 46  KGTLIGFDDYVNMVLENVEEFDNEGPKGKVIKKMLLNGSQVAML 89


>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
           Thermoprotei|Rep: Small nuclear ribonucleoprotein -
           Cenarchaeum symbiosum
          Length = 106

 Score = 37.9 bits (84), Expect = 0.38
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = +2

Query: 269 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           +G +   D YMN+++ +AEE H  SK     GR++++G+N+  I+
Sbjct: 58  KGKMENVDSYMNLIMTDAEEFH-DSKVVANYGRVIVRGNNVLFIR 101


>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
           Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
           Aeropyrum pernix
          Length = 77

 Score = 37.9 bits (84), Expect = 0.38
 Identities = 17/47 (36%), Positives = 33/47 (70%)
 Frame = +2

Query: 260 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           LRI+G +  +D+++NI+L +AEE+   S  R  +G  +++GD++ +I
Sbjct: 29  LRIKGVLKTYDQHLNIILGDAEEIGETSIRR--LGLTLVRGDSVVVI 73


>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
           Filobasidiella neoformans|Rep: U6 snRNA binding protein,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 131

 Score = 37.5 bits (83), Expect = 0.51
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           G + G+D+ MN+V+D+  E +   +  + +G ++++G NI L+
Sbjct: 49  GILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLV 91


>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
           Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 104

 Score = 37.5 bits (83), Expect = 0.51
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +2

Query: 257 NLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           N    G ++GFD+Y+N+VL++  E        K + +I++ G+NI ++
Sbjct: 46  NSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTK-LSKILLNGNNICML 92


>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
           n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 85

 Score = 37.1 bits (82), Expect = 0.67
 Identities = 17/51 (33%), Positives = 32/51 (62%)
 Frame = +2

Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           N N  + G + GFD +MNI L +  EV +    + +IG ++++G++I L++
Sbjct: 24  NGNRTVHGILRGFDTFMNIALKDTVEV-VSPTEKYEIGMVIIRGNSILLME 73


>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
           n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
           protein Sm - Aeropyrum pernix
          Length = 94

 Score = 37.1 bits (82), Expect = 0.67
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +2

Query: 203 FRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEV-HMKSKNRKQIGRIMMK 379
           F+YL+     QI++         G +V  D  MN++LD+A EV    ++   +IGR+++K
Sbjct: 13  FKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLIK 72

Query: 380 GDNITLI 400
           G  +  I
Sbjct: 73  GSMVEFI 79


>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
           Euryarchaeota|Rep: Putative snRNP Sm-like protein -
           Methanobacterium thermoautotrophicum
          Length = 81

 Score = 37.1 bits (82), Expect = 0.67
 Identities = 17/43 (39%), Positives = 29/43 (67%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           G +  FD +MN+VL++AEE+      R+ +G ++++GDNI  I
Sbjct: 38  GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYI 79


>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
           Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
           Plasmodium berghei
          Length = 194

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
 Frame = +2

Query: 227 RVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEE---VHMKSKNRKQI----GR 367
           R++ WL   V + I       G  + +D +MNIVL +AEE   V  K  N K+I    G 
Sbjct: 6   RLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEIKRVVGL 65

Query: 368 IMMKGDNI 391
           I+++GDNI
Sbjct: 66  ILIRGDNI 73


>UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila
           melanogaster RE35747p; n=1; Yarrowia lipolytica|Rep:
           Similar to tr|Q8IGS9 Drosophila melanogaster RE35747p -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 131

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 266 IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           + GH++  D +MN+ L E EE     +N   +    ++G NI  +Q
Sbjct: 27  LRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVRGSNIKALQ 72


>UniRef50_Q0U170 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 412

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 27/112 (24%), Positives = 40/112 (35%)
 Frame = +1

Query: 85  RRLFVSTIIFHSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLAIRKREPE 264
           RRL    +   S    Q K    R  E S G+   H+  LP+   PE  +   ++   P 
Sbjct: 11  RRLLTQQLAQGSNGLPQRKKSRSRSREGSSGNAPPHKEPLPV---PEHRSERPMKSSRPR 67

Query: 265 D*RTHRGF**IHEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQR 420
           D    RG         R     PY+  +  +  +  D  R H     R+ +R
Sbjct: 68  DASRERGVKEAPSAAGRELSPEPYKKPRGSSRERRRDRSRDHTRDRSRDRRR 119


>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
           putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
           Sm-like protein, putative - Theileria annulata
          Length = 90

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 400
           +IW+    +  I G + GFD+YMN+VL++  +    +   K  ++   ++ G+N+ ++
Sbjct: 23  KIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGNNVAML 80


>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 134

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 17/54 (31%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
 Frame = +2

Query: 263 RIEGHIVGFDEYMNIVLDEA-EEVHMKSKNRK------QIGRIMMKGDNITLIQ 403
           +I+G + GFD ++N+V+DEA E+VH ++ N        + G ++++G+++T ++
Sbjct: 73  KIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVWQDGDRCGTVVVRGNSVTSLE 126


>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
           n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
           LSm8 - Homo sapiens (Human)
          Length = 96

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
 Frame = +2

Query: 266 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 400
           I G + GFD+ +N++LDE+ E V   S+  +Q+  G  +++GDN+ +I
Sbjct: 23  IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70


>UniRef50_Q9L9N8 Cluster: ORF06; n=9; Borrelia burgdorferi
           group|Rep: ORF06 - Borrelia burgdorferi (Lyme disease
           spirochete)
          Length = 184

 Score = 35.5 bits (78), Expect = 2.0
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 230 VQIWLYENVNLRIEGHIVGFDEYMN---IVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           V+ W+Y N+ +   G +  F        + + E E++ + +KN   IG  + KGDN+ L+
Sbjct: 24  VKNWIYSNIFIIKIGTVKEFKHQTQEAIVTIPEFEDLEIHTKNISNIGLELSKGDNVLLL 83

Query: 401 Q 403
           Q
Sbjct: 84  Q 84


>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
           putative; n=2; Plasmodium|Rep: U6 snRNA-associated
           Sm-like protein LSm8, putative - Plasmodium vivax
          Length = 95

 Score = 35.5 bits (78), Expect = 2.0
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 209 YLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQIGRIMMKGD 385
           YL+N    +I +  N +    G + GFD+  NI+L    E ++ +S  +  +G  +++GD
Sbjct: 9   YLEN----EILVITNDSRIFTGKLKGFDQTTNIILGNCYERIYKESLEKISLGLYIIRGD 64

Query: 386 NITLI 400
            +TLI
Sbjct: 65  TVTLI 69


>UniRef50_Q90643 Cluster: Interferon regulatory factor 3; n=4;
           Gallus gallus|Rep: Interferon regulatory factor 3 -
           Gallus gallus (Chicken)
          Length = 491

 Score = 35.5 bits (78), Expect = 2.0
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 45  DFEVS*RTRIPGLAAFICFYHNFSFTKVNTNKKWLIKAHRKFRR*WY 185
           DF  S R R P    F+CF   FS TK   +K  L+K   +F   WY
Sbjct: 407 DFRDSRRERSPDFTIFLCFGQCFSSTKPKESKLILVKLVPQFCEYWY 453


>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
           Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 201

 Score = 34.7 bits (76), Expect = 3.6
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
 Frame = +2

Query: 224 SRVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEEVH-MKSKN------RKQIG 364
           SR++ WL   V + I       G  + +D +MNIVL +AEE   +KS+       ++ +G
Sbjct: 5   SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64

Query: 365 RIMMKGDNI 391
            I+++G+NI
Sbjct: 65  LILIRGENI 73


>UniRef50_Q247T3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1357

 Score = 34.7 bits (76), Expect = 3.6
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +2

Query: 230 VQIWLYENVNLR-IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
           +Q++  ENV L+ IE  ++G D  +N+ +D + + ++K+ +  +I  + +KGD
Sbjct: 461 IQVFQDENVQLQPIEDQVIGSDLQLNVSIDPSSQQYIKNASFIKIVNLPIKGD 513


>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
           Archaea|Rep: Putative snRNP Sm-like protein -
           Archaeoglobus fulgidus
          Length = 77

 Score = 34.7 bits (76), Expect = 3.6
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           G + G+D +MN+VL +AEE+      RK +G ++++GD +  +
Sbjct: 29  GTLDGYDIHMNLVLLDAEEIQNGEVVRK-VGSVVIRGDTVVFV 70


>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
           G; n=7; Ascomycota|Rep: Probable small nuclear
           ribonucleoprotein G - Schizosaccharomyces pombe (Fission
           yeast)
          Length = 77

 Score = 34.7 bits (76), Expect = 3.6
 Identities = 15/57 (26%), Positives = 38/57 (66%)
 Frame = +2

Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 403
           Q+++  N + ++ G + G+D ++NIVL+++ E  +  +  K IG + ++G+++ +I+
Sbjct: 16  QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71


>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
           E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
           ribonucleoprotein E - Ostreococcus tauri
          Length = 101

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 15/66 (22%), Positives = 41/66 (62%)
 Frame = +2

Query: 206 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
           RY+  + R+++    N N  + G + GFD+++N+VLD++   +  +  +  +G ++++G+
Sbjct: 29  RYMDKKLRLRL----NGNRSVTGILRGFDQFLNLVLDDS--TNDTTTEKTPMGMVVVRGN 82

Query: 386 NITLIQ 403
           ++  ++
Sbjct: 83  SVVSME 88


>UniRef50_Q5CME6 Cluster: Similar to small nuclear
           ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
           small nuclear ribonucleoprotein - Cryptosporidium
           hominis
          Length = 139

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEAEEVHMKSKN------RKQIGRIMMKGDNI 391
           G+++ FD +MN+VL + +E     K       ++ +G IM++G+NI
Sbjct: 21  GNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIMLRGENI 66


>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
           bovis|Rep: Sm domain containing protein - Babesia bovis
          Length = 159

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
 Frame = +2

Query: 224 SRVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEEVHM---------KSKNRKQ 358
           +R+Q WL   V + I+      G  + FD++MN+VL + EE  +         K + ++ 
Sbjct: 6   TRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRT 65

Query: 359 IGRIMMKGDNI 391
           +G IM++G+NI
Sbjct: 66  LGFIMLRGENI 76


>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence; n=3;
           Oligohymenophorea|Rep: Chromosome undetermined
           scaffold_167, whole genome shotgun sequence - Paramecium
           tetraurelia
          Length = 138

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEAEEVHMKS------KNRKQIGRIMMKGDNI 391
           G  + FD+++N++L E EE  ++       + ++ +G I+++GDNI
Sbjct: 27  GTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNI 72


>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
           Euryarchaeota|Rep: Putative snRNP Sm-like protein -
           Pyrococcus furiosus
          Length = 76

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           G ++G+D ++N+VL  A E+    +  K+ G+I+++GDN+  I
Sbjct: 29  GKLIGYDIHLNVVLANA-ELLQDGEVVKKYGKIVIRGDNVLAI 70


>UniRef50_Q8Z615 Cluster: Putative uncharacterized protein STY2046;
           n=1; Salmonella typhi|Rep: Putative uncharacterized
           protein STY2046 - Salmonella typhi
          Length = 100

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 82  WRRLFVSTIIFHSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLAIRK 252
           WR + V  I+   + +IQTK          +G+     P  P PT  +S A+ A R+
Sbjct: 25  WRYILVFDIVKSPKVTIQTKRIFMSEKNKPQGENKPQHPVAPKPTPTQSTADFATRR 81


>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
           Guillardia theta|Rep: Small nuclear ribonucleoprotein F
           - Guillardia theta (Cryptomonas phi)
          Length = 73

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           G  +G D YMNI+LD   EV +  +N   +G ++++ +NI  I
Sbjct: 27  GIFIGSDNYMNIILDSCSEV-ITEQNLGFLGLVLIRCNNILFI 68


>UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 137

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLIQ 403
           QI +    N  I G I   D Y+NI L +A+  + + KN++   +  I+++  NI  IQ
Sbjct: 42  QITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSRNIRFIQ 100


>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
           putative; n=2; Culicidae|Rep: Small nuclear
           ribonucleoprotein, core, putative - Aedes aegypti
           (Yellowfever mosquito)
          Length = 162

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
 Frame = +2

Query: 272 GHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 400
           G + GFD+ +NI+LDE+ E V+  +   +Q+  G  +++GDN+ +I
Sbjct: 91  GTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRGDNVAVI 136


>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
           Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
           processing complex subunit Lsm5 - Candida albicans
           (Yeast)
          Length = 119

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = +2

Query: 182 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQI 361
           V P+ +I R +  R RV +   +  N    G ++GFD+Y+N+VL++  EV         I
Sbjct: 52  VLPLEVIDRSVGKRVRVLMTGDKEFN----GKLIGFDDYVNMVLEDVTEV----DGGAPI 103

Query: 362 GRIMMKGDNITLI 400
            ++++ G +I +I
Sbjct: 104 KKMLLNGGHIAMI 116


>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
           n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
           homolog - Pyrobaculum aerophilum
          Length = 85

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 12/45 (26%), Positives = 28/45 (62%)
 Frame = +2

Query: 266 IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 400
           ++G +  +D  MN+VL++A E+    + + + GRI+++G  +  +
Sbjct: 34  VKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIRGSQVIYV 78


>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
           Thermofilum pendens Hrk 5|Rep: Like-Sm
           ribonucleoprotein, core - Thermofilum pendens (strain
           Hrk 5)
          Length = 100

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +2

Query: 209 YLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDN 388
           +L+N+S   +++         G +   D  MN+VLD+A+E+   +K   Q+G + ++G N
Sbjct: 6   HLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIRGSN 65

Query: 389 ITLI 400
           +  +
Sbjct: 66  LLFV 69


>UniRef50_Q8ILD6 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1195

 Score = 33.5 bits (73), Expect = 8.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 439 NLTSH*RAGVHVLYECYVVSLHHYSSYLFSVFRFHMDFFSFVENN 305
           N  +H     H+  ECY  S + + S+ F    ++ +FF+F +N+
Sbjct: 426 NYKTHETTQYHIFTECYSASFNKWVSFFFPFNVYYFNFFNFSKND 470


>UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of
           strain CBS767 of Debaryomyces hansenii; n=1;
           Debaryomyces hansenii|Rep: Debaryomyces hansenii
           chromosome E of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 101

 Score = 33.5 bits (73), Expect = 8.2
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 269 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ--IGRIMMKGDNITLIQ 403
           +G ++  D YMN+ LD+  EV  +   +K+  IG I ++ +N+  I+
Sbjct: 33  KGTLISIDNYMNLQLDKTSEVIYEDGEKKEEVIGEIFIRCNNVLFIR 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,085,597
Number of Sequences: 1657284
Number of extensions: 11584451
Number of successful extensions: 35413
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 28817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35018
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89407040613
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -