Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A01
         (1053 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7DWG3 Cluster: Cell wall glycoprotein GP2; n=4; Chlamy...    28   2.6  
UniRef50_A7R244 Cluster: Chromosome undetermined scaffold_398, w...    35   4.1  
UniRef50_Q28H33 Cluster: Novel protein; n=4; Xenopus tropicalis|...    34   7.1  

>UniRef50_A7DWG3 Cluster: Cell wall glycoprotein GP2; n=4;
            Chlamydomonas reinhardtii|Rep: Cell wall glycoprotein GP2
            - Chlamydomonas reinhardtii
          Length = 1226

 Score = 28.3 bits (60), Expect(2) = 2.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 55   PVXXXPXXPPPXXPPPP 5
            PV   P  PPP  PPPP
Sbjct: 970  PVLSPPPSPPPPSPPPP 986



 Score = 25.8 bits (54), Expect(2) = 2.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 31   PPPXXPPPPP 2
            PPP  PPPPP
Sbjct: 1020 PPPSPPPPPP 1029


>UniRef50_A7R244 Cluster: Chromosome undetermined scaffold_398,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_398, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 822

 Score = 34.7 bits (76), Expect = 4.1
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 64  FLXPVXXXPXXPPPXXPPPPP 2
           FL PV   P  PPP  PPPPP
Sbjct: 328 FLKPVSAPPPPPPPRPPPPPP 348


>UniRef50_Q28H33 Cluster: Novel protein; n=4; Xenopus
           tropicalis|Rep: Novel protein - Xenopus tropicalis
           (Western clawed frog) (Silurana tropicalis)
          Length = 353

 Score = 33.9 bits (74), Expect = 7.1
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 100 TPRXAXHVRTKXFLXPVXXXPXXPPPXXPPPPP 2
           TP    H  T     P    P  PPP  PPPPP
Sbjct: 145 TPAIPIHSETAKQSTPALHPPLPPPPPPPPPPP 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,900,103
Number of Sequences: 1657284
Number of extensions: 13466030
Number of successful extensions: 107164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69203
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 101654580423
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)