Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40031
         (487 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.5  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    22   3.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   7.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 418 FLEALEVFEHLIYRGISIFLSAALDNSDHVYVFRERRSCNLTDDSIIFIERSEF 257
           F + L  F+ L+       L A    S  V +FR  R  ++  DSI+F+    +
Sbjct: 372 FAKRLPGFDKLLREDQIALLKAC---SSEVMMFRMARRYDVQTDSILFVNNQPY 422


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
          protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 40 CPAWFSQCWLLQ 75
          CP  FS+ WLLQ
Sbjct: 13 CPKAFSRPWLLQ 24


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 382 YRGISIFLSAALDNSDHVYVFRERRSCNLTDDSIIFIE 269
           YR I++ L+  L N        E   C++ + ++IF E
Sbjct: 173 YRNINLLLTEQLQNRRFFAKKMEGLVCSIKELNMIFNE 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,987
Number of Sequences: 336
Number of extensions: 2402
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)