Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40002
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 552 KVFKYSYNICRTSFKALLL 496
           K++KY+YNI   S  A ++
Sbjct: 41  KIYKYTYNIVAVSLTAYMV 59


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 561 LTSKVFKYSYNI-CRTSFKALLLAPIFLAMVQPLRLK 454
           ++ + FK  Y   C   FKA+L   I     +PL +K
Sbjct: 380 MSGESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIK 416


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 561 LTSKVFKYSYNI-CRTSFKALLLAPIFLAMVQPLRLK 454
           ++ + FK  Y   C   FKA+L   I     +PL +K
Sbjct: 380 MSGESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIK 416


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,980
Number of Sequences: 336
Number of extensions: 2754
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)