Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10407
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.9  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 335 SRSPYW*NQCRRHVERIHRLSSHQCWLDE 249
           +  P+  ++CR    R H L  H+C  +E
Sbjct: 243 NEKPFECDKCRGRFRRRHHLVHHKCGGEE 271


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 226 GWLKNGRLSS 255
           GWLK G+LSS
Sbjct: 124 GWLKKGKLSS 133


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 520 CIRKVKVLKRPRFEISKLME 579
           C+R     KRP+FE S   E
Sbjct: 192 CLRTCSSAKRPKFENSSCDE 211


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 539 TFTFRMQTSRKGRCHGRPSRCPWQW 465
           T  FRM     G  H  PSR    W
Sbjct: 332 TLYFRMPHKCNGNAHNCPSRSHPVW 356


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 539 TFTFRMQTSRKGRCHGRPSRCPWQW 465
           T  FRM     G  H  PSR    W
Sbjct: 339 TLYFRMPHKCNGNAHNCPSRSHPVW 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,075
Number of Sequences: 336
Number of extensions: 3340
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)