Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30104
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.0  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    23   1.8  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    23   1.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.4  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.6  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.4  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 276 KKFQSDSPTFLKHSSIHS--QPY 214
           KK  SDS T  KH  IHS  +PY
Sbjct: 84  KKAFSDSSTLTKHLRIHSGEKPY 106


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 276 KKFQSDSPTFLKHSSIHS--QPY 214
           KK  SDS T  KH  IHS  +PY
Sbjct: 340 KKAFSDSSTLTKHLRIHSGEKPY 362


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 285 SNPVFSIILALTDLLKQWLGTTVL 356
           SNP      A+ +LL  WLGT +L
Sbjct: 100 SNPTHMEKSAIYNLLHDWLGTGLL 123


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 285 SNPVFSIILALTDLLKQWLGTTVL 356
           SNP      A+ +LL  WLGT +L
Sbjct: 100 SNPTHMEKSAIYNLLHDWLGTGLL 123


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 614 NDHRYSCEDCGNWHARLPCGCIKL 543
           N +RYSC DC   +A   C  +K+
Sbjct: 283 NVYRYSCRDCS--YATKYCHSLKI 304


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 614 NDHRYSCEDCGNWHARLPCGCIKL 543
           N +RYSC DC   +A   C  +K+
Sbjct: 41  NVYRYSCRDCS--YATKYCHSLKI 62


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 131 NSDMCNKPITTNNCD 175
           N    N PI+T +CD
Sbjct: 86  NKQQANPPISTEHCD 100


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 507 GGGNCHKGCWRN 472
           GG   H GCW +
Sbjct: 363 GGDEVHLGCWNS 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,598
Number of Sequences: 336
Number of extensions: 2744
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)