Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30097
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = -3

Query: 469  HARVDTMLTYAELPH*VVITSWVVAPSPAQFRYNYT*NGDGTTSPKWVS 323
            + R    L Y E+ H +    W V   P +    Y   GD     +WVS
Sbjct: 1670 YTRAAGFLAYYEICHNIKTQGWTVVQDPNRRMGPYAYKGD-----QWVS 1713


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 265 MPKAKLHRPRRMPRNEQTAWRPILG*SY 348
           MP   +H P   P   Q A + I+G  Y
Sbjct: 452 MPSQYIHEPWTAPEQVQRAAKCIIGKDY 479


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 436 QHRLALYRLEHDWKRAYVSVSASYILPVKVSANLFIF 546
           Q R  +Y     WK     VS  +IL VK     F F
Sbjct: 293 QSRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 436 QHRLALYRLEHDWKRAYVSVSASYILPVKVSANLFIF 546
           Q R  +Y     WK     VS  +IL VK     F F
Sbjct: 293 QSRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 436 QHRLALYRLEHDWKRAYVSVSASYILPVKVSANLFIF 546
           Q R  +Y     WK     VS  +IL VK     F F
Sbjct: 293 QSRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 436 QHRLALYRLEHDWKRAYVSVSASYILPVKVSANLFIF 546
           Q R  +Y     WK     VS  +IL VK     F F
Sbjct: 293 QSRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 302 QEMNKPPGDP 331
           Q M++PPGDP
Sbjct: 429 QMMHRPPGDP 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,612
Number of Sequences: 336
Number of extensions: 2435
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)