Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30086
         (825 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.045
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.2  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   5.1  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   5.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 29.1 bits (62), Expect = 0.045
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 305  PPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVES 484
            P  P+   G +  + S   +   WTT P+T   W      P   + TT R T    T  S
Sbjct: 1012 PAPPQVTTGVDTGASSTEHMHPDWTTKPSTW--WSSTTTSPWWTTTTTRRTTTTRPTTTS 1069

Query: 485  STRARYSSN 511
            +T    ++N
Sbjct: 1070 TTTRPTTTN 1078


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 76  PTESRSLN-SNPLLLGRKFCPRRNYS 150
           P   +SL+ S+P  +G K+CPRR +S
Sbjct: 102 PASQQSLDASDPDAMG-KWCPRREWS 126


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 76  PTESRSLN-SNPLLLGRKFCPRRNYS 150
           P   +SL+ S+P  +G K+CPRR +S
Sbjct: 258 PASQQSLDASDPDAMG-KWCPRREWS 282


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 496 KIFK*CRQTSSQCIHISYNNYKKLYK 573
           ++FK  +  S+  +HI+  NY ++ K
Sbjct: 328 ELFKLAQHVSANIVHITAGNYFEINK 353


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 496 KIFK*CRQTSSQCIHISYNNYKKLYK 573
           ++FK  +  S+  +HI+  NY ++ K
Sbjct: 328 ELFKLAQHVSANIVHITAGNYFEINK 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,363
Number of Sequences: 336
Number of extensions: 5171
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)