Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30077
         (849 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.76 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   7.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   7.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 689  PSSW*TGKLSSPWW 648
            PS+W +   +SPWW
Sbjct: 1039 PSTWWSSTTTSPWW 1052



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 218  SRWTQYSGHTRSPQARAAHISALQQASKNNPNPNDDGSYDPRWDNEEYWQ 367
            S   +YS     PQARAA I+ +    +     N DG  D  W+  + WQ
Sbjct: 2404 SAGNKYSRLVNDPQARAAFIAHVLAFIE---EWNFDG-LDLDWEYPKCWQ 2449


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 173 CAARQRQTSYYDHGFHFR 120
           C A  +   YYD   HFR
Sbjct: 20  CKAESKVVCYYDSKSHFR 37


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 QYSGHTRSPQARAAHISALQQASKNNPNPNDD 325
           Q SG +RS Q           AS+N P P D+
Sbjct: 242 QSSGSSRSHQPATKSKPRPAPASRNAPEPADN 273


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 692 IPSSW*TGKLSSPWWAGQSQSLGEAGAVPL 603
           +P+++  G+++SP  +  S SLG+  A P+
Sbjct: 52  LPANFSFGQVNSPPSSTSSGSLGQFPATPV 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,836
Number of Sequences: 336
Number of extensions: 4361
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)