Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30074
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   141   4e-36
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   141   4e-36
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   129   1e-32
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   127   7e-32
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.58 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.58 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.4  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   4.1  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 138 QKESTLHLV 146



 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 214 QKESTLHLV 222



 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 290 QKESTLHLV 298



 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 366 QKESTLHLV 374



 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 458 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 517

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 518 QKESTLHLV 526



 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 534 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 593

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 594 QKESTLHLV 602



 Score =  141 bits (341), Expect = 4e-36
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 610 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 669

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 670 QKESTLHLV 678



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNI
Sbjct: 382 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNI 441

Query: 183 QKESTLHLV 209
           QKESTLHLV
Sbjct: 442 QKESTLHLV 450


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  129 bits (312), Expect = 1e-32
 Identities = 62/63 (98%), Positives = 63/63 (100%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 183 QKE 191
           QKE
Sbjct: 62  QKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  127 bits (306), Expect = 7e-32
 Identities = 61/63 (96%), Positives = 62/63 (98%)
 Frame = +3

Query: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 182
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNI
Sbjct: 50  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNI 109

Query: 183 QKE 191
           QKE
Sbjct: 110 QKE 112



 Score = 88.6 bits (210), Expect = 3e-20
 Identities = 41/42 (97%), Positives = 42/42 (100%)
 Frame = +3

Query: 84  KIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 209
           KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 520 KSIITAVASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 395
           + I T   +VP  L GTY   ++F    +V L  VV   HHR
Sbjct: 262 EKIPTTSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 520 KSIITAVASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 395
           + I T   +VP  L GTY   ++F    +V L  VV   HHR
Sbjct: 262 EKIPTTSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 481 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 395
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 481 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 395
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 481 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 395
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 372 CSPVNSRRRRWILPFSSTL*NLRTASLTFFFLCLIF 265
           C P  S  R + + FS+T   L  A +TF  + L F
Sbjct: 253 CRPTFSAARFYGIDFSNTFLGLVGAVVTFLIVLLQF 288


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 225 HHEASTPGGGWIPSGYCSPR 166
           HH    P GG  P G   PR
Sbjct: 63  HHYGGPPSGGQPPQGMPYPR 82


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 248 LLLAFLSATTKPQHQVE----GGFLLDIVVREGTSIFQLLSS 135
           L+ AFLS   +    +     GGFLL  VV+ G ++   LSS
Sbjct: 87  LITAFLSVLPQLAWDITYRFYGGFLLCKVVKYGQTLGPYLSS 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,203
Number of Sequences: 336
Number of extensions: 2545
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)