Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00030
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   1.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.2  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   8.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   8.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.2  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   8.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.2  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 457 WKHWRSRH*LTIRVILFFIFLYNLI 531
           + +W+S++  T +  LFF   YNL+
Sbjct: 21  YSYWQSKNVPTDKPFLFFGSFYNLV 45


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 245 RKEGTDNTDYSHNIESSRCPYSLISF 322
           +KE +D+ + ++  E + C Y  I+F
Sbjct: 455 KKEESDSNNNNNKEEGNSCQYCNIAF 480


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 257 TDNTDYSHNIE 289
           T+N DY HN++
Sbjct: 69  TENCDYIHNVD 79


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 257 TDNTDYSHNIE 289
           T+N DY HN++
Sbjct: 69  TENCDYIHNVD 79


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 444 RYIKCKKCKIDVDYV 400
           RYI C K K+ +D V
Sbjct: 18  RYISCLKGKMPIDLV 32


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 487 TIRVILFFIFLYNLIWYTP 543
           +IR++LF   ++ L+ +TP
Sbjct: 14  SIRILLFQSRIFGLVTFTP 32


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 444 RYIKCKKCKIDVDYV 400
           RYI C K K+ +D V
Sbjct: 174 RYISCLKGKMPIDLV 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,117
Number of Sequences: 336
Number of extensions: 2134
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)