Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00029
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    25   0.77 
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    25   0.77 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.1  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.2  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 400 IFCLIYSIKLYFLTTN 353
           +FC++Y + L+FLT N
Sbjct: 173 LFCVLYVVLLHFLTYN 188


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 400 IFCLIYSIKLYFLTTN 353
           +FC++Y + L+FLT N
Sbjct: 173 LFCVLYVVLLHFLTYN 188


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +1

Query: 64  KVIMGPNTIDIIAAFTLNFLQYVTSDHILPCNVTAMEPXKGKNEVCVQKTLQCVCEKGFI 243
           +V +  N  ++I  + LNF++ V     LP N++     + K    ++K L   C + F 
Sbjct: 356 RVFIMDNCEELIPEY-LNFIKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFE 414

Query: 244 RVGE 255
            + E
Sbjct: 415 ELAE 418


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 178 KAPLRSHYKAGC 143
           KA LRSH++A C
Sbjct: 165 KADLRSHFRALC 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,010
Number of Sequences: 336
Number of extensions: 3043
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)