Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00027
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    27   0.22 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.3  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 362 RSLTFIRYVDNNGILKNRLSHW*FSFLTFYAVVKFYINTILELISRTNILSVYVKV 529
           R+ T  + ++      N    W  +FL F+A + F  N    +  +TN+  V++ V
Sbjct: 199 RTETLAQILNQTVNFYNSAFGWPIAFLIFFATLDFLDNVDTIMYEKTNVTFVHLAV 254


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 513 PFMSRLTRYFKVCFFPTLRTLVMSSFLVI 599
           P +  L R  ++CFF + +    S FL++
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 513 PFMSRLTRYFKVCFFPTLRTLVMSSFLVI 599
           P +  L R  ++CFF + +    S FL++
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 513 PFMSRLTRYFKVCFFPTLRTLVMSSFLVI 599
           P +  L R  ++CFF + +    S FL++
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 513 PFMSRLTRYFKVCFFPTLRTLVMSSFLVI 599
           P +  L R  ++CFF + +    S FL++
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 716 IFSRNMNLILKYRWFLS 766
           ++S N+  +LK+ WFLS
Sbjct: 1   MWSENITDVLKHVWFLS 17


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 322 LDKIGNVRRTGWIAIFDFHS 381
           LDK G   +  W+A FD +S
Sbjct: 905 LDKSGRSVQLSWVAPFDGNS 924


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 431 FSFLTFYAVVKFYINTILELISRTNILSVYVKVDPVF 541
           ++F+    V  FY   I+  +    +L +Y  V P+F
Sbjct: 105 YAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLF 141


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 66  NFDSFKFTKKISYLLYRH 13
           +FD+F+ TKK+ +L   H
Sbjct: 288 DFDTFRNTKKLQWLDTSH 305


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,855
Number of Sequences: 336
Number of extensions: 3991
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)