Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00026
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.59 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.0  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      24   1.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   1.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 382 LANILSLVALKLQHLAVLRVLHDRTLHANSFL 287
           L +I   VAL ++HLA  RV+H R L A + L
Sbjct: 594 LLSIARQVALGMEHLAKTRVVH-RDLAARNVL 624


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 446 LLKHNMSTLNIVL*EIARCNYNPIKNM 526
           LLKHN+  L+ ++  I    Y PIK +
Sbjct: 115 LLKHNLFLLDNIVKPIIAFYYKPIKTL 141


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 567 GC-PRPVPCDFLCCIKYCKSYILSPPSRL 650
           GC P+P+P     CI  C SYI    S++
Sbjct: 54  GCVPKPIPS--FACIGRCASYIQVSGSKI 80


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 556 KENTVVRDLCLATSSVV*NIVNLIYYRRRLVS*VAK 663
           K    +  LC+ T+ V  + +++IYYR+ + + +++
Sbjct: 25  KTRAKIYALCVVTALVTPSALSIIYYRQPIYAKISE 60


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 512 PIKNMYLESTDVYR 553
           PI N Y E+  VYR
Sbjct: 773 PIPNKYYEAKQVYR 786


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,408
Number of Sequences: 336
Number of extensions: 3241
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)