Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00016
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.91 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.8  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +3

Query: 75  KLKMVSKAELACVYSALILVDD--------DVAVTGEKISTILKAAAVDVEPYWPGLFAK 230
           ++KM  K EL C+ + ++   D        +V +  EKI  +L+       P  PG FAK
Sbjct: 305 EMKM-DKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAK 363

Query: 231 AL 236
            L
Sbjct: 364 LL 365


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 250 TLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*T 110
           T  PS  L+NR G+      A+         P T+T++ T +  + T
Sbjct: 132 TSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFT 178


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 254 TDIDAFQGFGEQTWPI 207
           TD+D F+G     WP+
Sbjct: 515 TDLDDFKGVCGMKWPL 530


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,225
Number of Sequences: 336
Number of extensions: 1874
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)