Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00011
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    69   4e-14
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.6  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    22   4.6  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    22   4.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   4.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 68.9 bits (161), Expect = 4e-14
 Identities = 32/72 (44%), Positives = 45/72 (62%)
 Frame = +2

Query: 539 PGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
           P  +T+IFVETKR A+ ++  +      +  +HGD+ Q ER + L  FK G   +LVAT 
Sbjct: 408 PNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATG 467

Query: 719 VAARGLDVDGIQ 754
           VAARGLD+  +Q
Sbjct: 468 VAARGLDIKDVQ 479



 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
 Frame = +3

Query: 207 FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIE-QIRP---DRQTLMWSATWPKEV 374
           F+ +G+    ++  F LDEADRMLDMGF   + +++  Q  P   +RQTLM+SAT+P+EV
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEV 358

Query: 375 KKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
           ++LA  +L +YI I +G +  SA  ++ Q      + +K +KL    +K    + L+
Sbjct: 359 QQLAGKFLLNYIFIAVGIVG-SACTDVEQKFFQVSKFDKRSKLVSILEKAPNERTLI 414



 Score = 63.7 bits (148), Expect = 2e-12
 Identities = 29/80 (36%), Positives = 44/80 (55%)
 Frame = +1

Query: 19  PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
           P+ ++++PTRELA QI      F + S V+   ++GG     Q   +  G  I++ATPGR
Sbjct: 236 PVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGR 295

Query: 199 LIDFLEKGTTNLQRCTYLVL 258
           L DF+ +G  +     Y VL
Sbjct: 296 LKDFVNRGNVSFNSLKYFVL 315


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 402 DYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCK 518
           +YI + + S  L +  + +     C E    N  N YC+
Sbjct: 466 NYISMKLQSFPLLSQRHQIDAKMFCNESSVSNCENEYCE 504


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 557 IFVETKRKAEPISRNIRRYGWPAVC 631
           IFV+++     I  N+    W AVC
Sbjct: 221 IFVKSRPSPATIISNVTVISWQAVC 245


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 557 IFVETKRKAEPISRNIRRYGWPAVC 631
           IFV+++     I  N+    W AVC
Sbjct: 221 IFVKSRPSPATIISNVTVISWQAVC 245


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 557 IFVETKRKAEPISRNIRRYGWPAVC 631
           IFV+++     I  N+    W AVC
Sbjct: 541 IFVKSRPSPATIISNVTVISWQAVC 565


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 557 IFVETKRKAEPISRNIRRYGWPA 625
           + V  +    P    +RRYGW A
Sbjct: 575 VVVSNRLVESPCCITMRRYGWTA 597


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,438
Number of Sequences: 336
Number of extensions: 4239
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)