Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00006
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.1  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   8.9  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 366 VPH*HCLGYQHQG 328
           + H HC GY  QG
Sbjct: 9   IMHRHCFGYPFQG 21


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 393 TNLPDETSEMMLSMLFNQFPGFKEV 467
           T+  +  S      L+NQFPG  +V
Sbjct: 165 TSSNNSASPKACQFLYNQFPGSSQV 189


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 393 TNLPDETSEMMLSMLFNQFPGFKEV 467
           T+  +  S      L+NQFPG  +V
Sbjct: 185 TSSNNSASPKACQFLYNQFPGSSQV 209


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 411 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELEMKCNL 527
           T+ M+L++ F+Q    K++  +   H++     +M C+L
Sbjct: 8   TTMMVLNLFFSQMYFTKKLEQMRQVHEVDNQLKQMGCDL 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,368
Number of Sequences: 336
Number of extensions: 3263
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)