Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00004
         (783 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.4  

>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 551 EQKSFYFVSTLVYLFILVFNINEKV*KIYQVIFFQTREGVSAYYLCKVPV 402
           E K +  +S L  +F  VFN+ +       V+  QTR  +    L K+ V
Sbjct: 158 EYKYYQILSHLSGIFFTVFNVAQCYLTTELVLMLQTRFVILNKQLTKITV 207


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 322 CKNISLSTIVSQFFTKRLHK 263
           C N+S+ TI   F TK+L +
Sbjct: 62  CLNLSIVTIFFNFATKKLEQ 81


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 160  LRLHPTESQFMLTF*LCSQRYQV 228
            +++ PT  ++ L   LC  RYQV
Sbjct: 1443 VQIGPTVEKYTLEKLLCGTRYQV 1465


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,699
Number of Sequences: 336
Number of extensions: 4471
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)