Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0059.Seq
         (299 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   3.8  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   3.8  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   3.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   6.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   6.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           19   8.7  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 6   LYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAAD 119
           ++C     AS  +        +Q+ ++ VDPAT +  D
Sbjct: 298 VFCDCSHQASLNIARRVQVTLLQVNLSQVDPATRKEID 335


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 6   LYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAAD 119
           ++C     AS  +        +Q+ ++ VDPAT +  D
Sbjct: 298 VFCDCSHQASLNIARRVQVTLLQVNLSQVDPATRKEID 335


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 6   LYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAAD 119
           ++C     AS  +        +Q+ ++ VDPAT +  D
Sbjct: 298 VFCDCSHQASLNIARRVQVTLLQVNLSQVDPATRKEID 335


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 141 CGAIRXMGESDDC 179
           CG++R + E  DC
Sbjct: 413 CGSLREIKEVSDC 425


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -2

Query: 118 SAARPVAGSTSAITSC 71
           S+++PV  +T++ T+C
Sbjct: 237 SSSQPVLSTTNSTTNC 252


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 63  ASVQLVIADVDPATGRAA 116
           ASV    A   P+TGR A
Sbjct: 114 ASVAAAFAPQGPSTGRGA 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,483
Number of Sequences: 336
Number of extensions: 823
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)