Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0063
         (486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   5.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   5.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 380 LSWFGC-WEMSATGPLNIVTRCSNG 451
           +S  GC  E  A GPL +V  CS G
Sbjct: 514 VSLIGCVTEGRAEGPLLVVEYCSRG 538


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 469  TRKTKNTVRTASYNIKRPSRRHFPT 395
            TR+T  T  T +    RP+  ++PT
Sbjct: 1057 TRRTTTTRPTTTSTTTRPTTTNWPT 1081


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 384 DSEQPPXLLKTAVPRRGAKLNARSTS 307
           D  +PP L  +     GA+ NA STS
Sbjct: 37  DGGKPPELTGSTNGDGGARSNADSTS 62


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 384 DSEQPPXLLKTAVPRRGAKLNARSTS 307
           D  +PP L  +     GA+ NA STS
Sbjct: 193 DGGKPPELTGSTNGDGGARSNADSTS 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,595
Number of Sequences: 336
Number of extensions: 1789
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)