Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30079.Seq
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.39 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   2.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 248 CSDWL-LHL-FPCIISMFIVAFLLLXXYFY 331
           CS +  +HL F C   +F V FLL   YFY
Sbjct: 75  CSGYFTVHLLFYCPFIIFTVHFLLCTYYFY 104


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 ATGYCIYFHALLVCSLLHFCYYXXISTSSLAVCLDLNN 365
           A  +C +  AL+ CS+  F     ++  + ++ L +++
Sbjct: 40  AKSFCTFVAALVYCSVTFFALSELLTDLATSILLKVSS 77


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 68   LRGLLVPNSCTPG 30
            + G LVP +C PG
Sbjct: 1225 VNGHLVPQNCAPG 1237


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 249  VATGYCIYFHALLVCSLLH 305
            + +G  I+   + +CSL+H
Sbjct: 1161 ILSGCIIFTEGIWICSLIH 1179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,490
Number of Sequences: 336
Number of extensions: 1583
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)