Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0028
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   0.75 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   0.75 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    25   0.75 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.0  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 313 PGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 432
           P G Y      +A  G  +G+      D Y D+S LG++E
Sbjct: 438 PAGSYCDVISGNAENGSCSGKTITVGGDGYADIS-LGANE 476


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 313 PGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 432
           P G Y      +A  G  +G+      D Y D+S LG++E
Sbjct: 439 PAGSYCDVISGNAENGSCSGKTITVGGDGYADIS-LGANE 477


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 313 PGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 432
           P G Y      +A  G  +G+      D Y D+S LG++E
Sbjct: 439 PAGSYCDVISGNAENGSCSGKTITVGGDGYADIS-LGANE 477


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   RGARNTYTKWRTKLIASQYGTN 71
           + +   + ++RTK++A  +GTN
Sbjct: 94  KDSSEAFNEFRTKILAQVHGTN 115


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 588 WSNVNPTNWLTEIFGLR 538
           WSN    +W  E+ G+R
Sbjct: 267 WSNATVDDWAKEMAGMR 283


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/67 (20%), Positives = 27/67 (40%)
 Frame = +1

Query: 286 VTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAIEWEEQF 465
           V RG    G   P + F G D    +    + +   + Y D  ++G   I    + + +F
Sbjct: 323 VVRGDN--GQNIPLTEFEGIDVLGNIIESSILSPNRNYYGDFHNMGHILIGYIHDPDHRF 380

Query: 466 RGKYGIV 486
              +G++
Sbjct: 381 LEPFGVM 387


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 41  ETNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKD 202
           + +S  VW  + +   L LI V V LI      NF SE +         K +K+
Sbjct: 227 QASSFVVWPLVENNPTLYLIPVSVILISVGWWENFVSETSYLPFIRALGKSKKE 280


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 41  ETNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKD 202
           + +S  VW  + +   L LI V V LI      NF SE +         K +K+
Sbjct: 227 QASSFVVWPLVENNPTLYLIPVSVILISVGWWENFVSETSYLPFIRALGKSKKE 280


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 649 NYPVPRDTRHL 617
           N+PVP+ T+H+
Sbjct: 525 NFPVPQKTKHV 535


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,926
Number of Sequences: 336
Number of extensions: 2811
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)