Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    25   0.36 
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    25   0.36 
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    25   0.36 
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   1.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.5  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   4.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   5.9  

>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 180 TLIPINLCSSVIMHMISYVLNLVFILRNV 94
           TL PINL   +I+ +I  +LN+  IL  +
Sbjct: 52  TLRPINLLVQIILDVILLILNVHTILTTI 80


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 180 TLIPINLCSSVIMHMISYVLNLVFILRNV 94
           TL PINL   +I+ +I  +LN+  IL  +
Sbjct: 52  TLRPINLLVQIILDVILLILNVHTILTTI 80


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 180 TLIPINLCSSVIMHMISYVLNLVFILRNV 94
           TL PINL   +I+ +I  +LN+  IL  +
Sbjct: 372 TLRPINLLVQIILDVILLILNVHTILTTI 400


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 183 FTLIPINLCSSVIMHMIS 130
           FT+I  +LC ++++H I+
Sbjct: 78  FTVIDFSLCKAILVHAIT 95


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 93  NYTIKNGIKKTKLWNWNTRI 34
           NY I++   K KLWN+N +I
Sbjct: 410 NYEIRH---KFKLWNFNNQI 426


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 200 DNRTYVIRLQRSEEKSVLY*NLVTGFIQHSLSGQ 301
           DN+ ++ RL+ S EKS L+ +  +      LSG+
Sbjct: 142 DNQDHLRRLEMSLEKSGLFSSKTSEHSVDELSGK 175


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 168 INLCSSVIMHMISYVLNLVFILRNVNYTIKNGI 70
           +N    +I+ +++  LNL+F+L    + + N I
Sbjct: 90  VNWYPRLIIGIMNSTLNLIFLLIQTRFEMINNI 122


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 266 PDSNTKHS-SPRIAANVSHTYDC 201
           P S+ + + SPR+  NV+   DC
Sbjct: 412 PGSDQRSTPSPRVYGNVNENQDC 434


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,104
Number of Sequences: 336
Number of extensions: 3094
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)