Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0060.Seq
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.6  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   6.4  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 156 LHKYIIF*EINKIILRDQFMLAIKIYKVCFL 64
           LHK+ I+ ++ KII+R     A+K    C L
Sbjct: 656 LHKFRIYIQVTKIIIRTDHQ-ALKFLSRCRL 685


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 305 CHDI-VFQ*YCILYSINDISIIYNKFVIANAIVISS 409
           C+ I +F  Y I YS+++ SII   + +A  ++ +S
Sbjct: 148 CYFIYLFTVYYIYYSVHEASIINFGYTLAKFMIFTS 183


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 384 MTNLLYIIEISFI---EYRIQYY*KTMS*H*VTRTLCRYITTILWITNTQQNISN 229
           M +L YI++I+ I      ++   K +  +    T CRY+ T+  I  T   + N
Sbjct: 167 MCSLYYILQITLIVNYALALKNRFKELQKYLKIETSCRYVGTLYRILTTMMEMVN 221


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 236 MFCCVFVIQRIVVMYLHNVRVT*CHDIVFQ*YCILYSINDISIIYNKFVIA 388
           +FCC F+I  + +++L  +    C  I+    CI Y      I    F  A
Sbjct: 267 LFCCAFIIFTMHLLFLLCIYYFYCALIIL--LCIYYFCRAFIIFPTHFYCA 315


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 344 SINDISIIYNKFVIANAIVISS 409
           +I  +SII N+FVI N  +  S
Sbjct: 178 TIEFVSIIRNRFVILNRYIEES 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,224
Number of Sequences: 336
Number of extensions: 3771
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)