Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0035.Seq
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.7  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 151 VYYQR-WQSVHLDKKMLL 201
           VY  R WQ +HL+KK +L
Sbjct: 531 VYNHRPWQQLHLNKKQIL 548


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 532 DLHGRQSMVKVDIKFEY*IFLLLLSINTFHIKSIFVTEDLSRLLSKPAM 386
           DLH R S +   +   Y + LLL+  + F    + +    + L+S P M
Sbjct: 217 DLHHRLSKLIKQLNATYGLILLLMFTSHFIFIVVSIFYMSAYLISNPIM 265


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 462 SNSKKIQYSNLISTLTIDCRPCRSPVTCMA 551
           SNS   + S L S L++   P   P T  A
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTA 162


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 462 SNSKKIQYSNLISTLTIDCRPCRSPVTCMA 551
           SNS   + S L S L++   P   P T  A
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTA 162


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 462 SNSKKIQYSNLISTLTIDCRPCRSPVTCMA 551
           SNS   + S L S L++   P   P T  A
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTA 162


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 462 SNSKKIQYSNLISTLTIDCRPCRSPVTCMA 551
           SNS   + S L S L++   P   P T  A
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTA 162


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 462 SNSKKIQYSNLISTLTIDCRPCRSPVTCMA 551
           SNS   + S L S L++   P   P T  A
Sbjct: 89  SNSNATKSSGLTSPLSVSTSPPGKPATSTA 118


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 462 SNSKKIQYSNLISTLTIDCRPCRSPVTCMA 551
           SNS   + S L S L++   P   P T  A
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTA 162


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 462 SNSKKIQYSNLISTLTIDCRPCRSPVTCMA 551
           SNS   + S L S L++   P   P T  A
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTA 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,926
Number of Sequences: 336
Number of extensions: 3651
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)