Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0033.Seq
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.22 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.7  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.7  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   8.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.2  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +3

Query: 273 KTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN*VSEQLTLLSRKMRFNQKAC 452
           + ++S   +S  ++  +IA+  ++  +KQ K+   N       E L   + K     K C
Sbjct: 134 REFASNMYLS-RLRRIEIATC-LRLSEKQVKIWFQNRRVKYKKEDLPAAAGKASNGNKCC 191

Query: 453 CTLKKPEGVRRRYENAYSCVQG-DITKLAVD 542
           C        R ++EN+ SC +  D+T +  D
Sbjct: 192 CLRTCSSAKRPKFENS-SCDEDIDVTNIDDD 221


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 428 FSAQQRELFRNLVIFDVHYSQLFLFIKILHFY 333
           F+ +  E+F+N+   DV +  L +++   H Y
Sbjct: 110 FALKVIEVFKNIEEVDVAFRSLAVWVPYKHLY 141


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 428 FSAQQRELFRNLVIFDVHYSQLFLFIKILHFY 333
           F+ +  E+F+N+   DV +  L +++   H Y
Sbjct: 110 FALKVIEVFKNIEEVDVAFRSLAVWVPYKHLY 141


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 306 NVKNAQIASVKVQYLDKQKKLAVMNIEYN*VS 401
           N K   I   K+Q +DKQ  L   +I Y  +S
Sbjct: 92  NAKQITIFFDKIQRIDKQFGLLGYSINYRRIS 123


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 288 KALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN*VS 401
           K+L   N+K  +IA++  +      +L  +++ YN +S
Sbjct: 140 KSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSIS 177


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 231 TRRNELPTNGSIPGKTYSSKALMSGN 308
           T+ +E PT  S   K  ++K   SGN
Sbjct: 412 TQASEQPTESSTTQKPQTTKTPESGN 437


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 174 HAPLHGASSNGNKRKKQTAEH 112
           +APL+  SS+   +K+   EH
Sbjct: 292 NAPLYSPSSDSQYQKQLNVEH 312


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,907
Number of Sequences: 336
Number of extensions: 3283
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)