Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0021.Seq
         (783 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    26   0.30 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.4  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +1

Query: 103 LTF*NQNIIRTFLFMKGKIIKVSYN-----LRNTVTIC**TLESFRINHQINKQSFVLLI 267
           LTF N ++    +F KGK+IK  +N      +  +  C  + +SFR+N  I     VLL+
Sbjct: 70  LTFFNVSLRIILVFSKGKVIKSFFNQGYELSKQEIFNC-CSKKSFRMNFAIFNLYMVLLL 128

Query: 268 I 270
           +
Sbjct: 129 L 129


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 752 CLSLTDRFC*ISTVISRILQMLVYVNLLLDIT*IPL 645
           CL+L+  +C    + S IL  L  + L  D+   P+
Sbjct: 40  CLNLSINYCICGYIFSAILFSLSILGLTEDLNSAPI 75


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 210 SSLTNCYSIPKIITYFNDFPF 148
           S +T+C S+P   +Y +D  F
Sbjct: 100 SVMTSCSSVPTTASYGSDLYF 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,116
Number of Sequences: 336
Number of extensions: 3384
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)