Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C03f
         (373 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.44 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   3.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   3.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   4.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   4.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   4.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   7.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   9.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 7   WVTSKTHTSRPETPGPQPPS 66
           W++S +    P TP P PPS
Sbjct: 106 WLSSPSGNVPPLTPSPGPPS 125


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 96  GFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFN 206
           GF+++     KIV +S +     GH +  L+G  IFN
Sbjct: 114 GFLLILTPNGKIVFVSHTVEHLLGHLQTDLMGQSIFN 150


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 37   PETPGPQPPSPCNVRPCVKTVSLC*RVVH 123
            P+  GPQP S C+          C R +H
Sbjct: 1268 PKMGGPQPYSACSENAFAAYPGDCTRYLH 1296


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 28  TSRPETPGPQPPSPC 72
           TSRP+   PQP   C
Sbjct: 93  TSRPKLQEPQPSQHC 107


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 55  EAPESPVSKCVSSMSPIV 2
           EAP  PV + + S++P+V
Sbjct: 55  EAPCDPVGRRLKSLAPLV 72



 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 279 QLTDISDDGYLTLMADNGDLREDLKIPDGD 368
           QLT ISD+   + + D   L   LK   G+
Sbjct: 26  QLTRISDEAIESTLNDRRYLLRQLKCATGE 55


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  SKTHTSRPETPGPQPPS 66
           S +HT    TP  +PPS
Sbjct: 60  STSHTDGASTPDVRPPS 76


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  SKTHTSRPETPGPQPPS 66
           S +HT    TP  +PPS
Sbjct: 216 STSHTDGASTPDVRPPS 232


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 13  TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC 108
           T+ T +S       Q P P +VRP    V  C
Sbjct: 206 TASTASSASNYSPSQSPEPESVRPLSLVVRRC 237


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 210 KKYEDICPSTHNMDV 254
           K YED CP++++  V
Sbjct: 665 KVYEDYCPTSNSGSV 679


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 212 FTIEDINPNQVNFSVAVLSGFG 147
           FT+EDI+P      +    G G
Sbjct: 39  FTVEDIDPTLCTHLIYSFVGLG 60


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 267 ASRGVRPCCVWR 232
           A+ G+RPC + R
Sbjct: 67  AANGIRPCVISR 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,910
Number of Sequences: 336
Number of extensions: 2274
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)