Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B12f
         (468 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    27   0.065
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.9  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   3.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   5.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   9.9  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 0.065
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +2

Query: 149 KTPTYTSTTRNATITSPPSRLGMN--PXXXXXXXXXXXXXXXKIHMDSTTSKPASNRCSI 322
           ++PT+  T RN +I   P  +  N  P                +   ST SKP   R S 
Sbjct: 638 RSPTFHLTVRNTSIIKIPFDVFRNMLPVRNVSVDVRDNILLKNLQNPSTGSKPGKPR-SA 696

Query: 323 FLSD-RVLSNTWS 358
           FL+D +++   WS
Sbjct: 697 FLTDLKLMGGKWS 709


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 201 HQDWV*ILRQIRGPNHQYHQRLEKY 275
           H D+   L QIR     YHQ LEKY
Sbjct: 144 HSDYRAKLAQIR---QIYHQELEKY 165


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 314 NDCLLASMLLNPYVFFKSLMILMIWSSYLSKDSYPVLMVGMLL*RSLS 171
           N C   S  +N  +F   +++L+++ +YL   S  V M    + RS +
Sbjct: 106 NCCSKKSFRMNFAIFNLYMVLLLLFDAYLWISSVGVRMFQYYIGRSFT 153


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 254 ILMIWSSYLSKDSY 213
           +++IWSS LSK  Y
Sbjct: 451 LVIIWSSNLSKRPY 464


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 111 IFGGMSYKEHFDVSN 67
           I  GM+++ HF+V N
Sbjct: 157 IHPGMTFRYHFNVHN 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,253
Number of Sequences: 336
Number of extensions: 2533
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)