Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A11f
         (323 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   0.80 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   2.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   4.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    19   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 0.80
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
 Frame = -2

Query: 235 PPTGIDDSFSRPAAISCST-SLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPST 59
           PP  ID S +  A + CS    P   +I   S   +      LR     A   +V PP  
Sbjct: 29  PPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDVPGLR--QVLANGNLVFPPFR 86

Query: 58  ASKY 47
           A  Y
Sbjct: 87  AEDY 90


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 94  SAAAGVVLPPSTASKYA 44
           +AAA  +LPP TA+  A
Sbjct: 131 AAAAAALLPPQTAAMAA 147


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 132 DAEKLKKVITE 164
           +AEKLKK ITE
Sbjct: 54  EAEKLKKGITE 64


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 66  PAQPVNTRPRN 34
           PA+PVN  PR+
Sbjct: 283 PARPVNQVPRD 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,168
Number of Sequences: 336
Number of extensions: 692
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6155018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)