Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0027.Seq
         (279 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   1.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   4.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   5.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    20   5.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    19   9.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    19   9.9  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 273 SAQNGLKCCLNIS 235
           S+Q G K CLN+S
Sbjct: 32  SSQKGQKTCLNLS 44


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 84  MLSLMFVLRRSKNFTSNVAIRMPPVIP 164
           MLS    L R     S V + +PP +P
Sbjct: 104 MLSERAALLRGVPTLSPVGVALPPTLP 130



 Score = 19.4 bits (38), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 109 DDPRISPLTS 138
           D P +SPLTS
Sbjct: 909 DKPSVSPLTS 918


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.8 bits (39), Expect = 5.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 149 HSYCDVRGEILGSSQDEHQRKHLP 78
           H YC ++         ++ RK+LP
Sbjct: 424 HCYCPIKFGRKADPNGDYIRKYLP 447


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 19.8 bits (39), Expect = 5.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 270 AQNGLKCCLNISC 232
           A NG KCC   +C
Sbjct: 184 ASNGNKCCCLRTC 196


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 206 FYFVGFQNSEVMINRDNW 153
           F  VGF+N+      +NW
Sbjct: 387 FNMVGFRNAVQETGIENW 404


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 268 SKRAKMLLEYFVHGIIEYDLGSILLVFRT 182
           SK  ++  E F HG++     S LLV +T
Sbjct: 862 SKLIRLFNEIFGHGLLLMFGISFLLVTQT 890


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,072
Number of Sequences: 336
Number of extensions: 1052
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4684108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)