Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0017.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   9.4  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 275 PLLWSPVLLNTRWT 234
           P++W  V+L T W+
Sbjct: 263 PIMWDRVMLLTFWS 276


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 60  TKRNCYYTFA 89
           TKR CYY +A
Sbjct: 110 TKRYCYYYYA 119


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 229 INVHLVLSRTGDHNSGTYPCGPTYYP 306
           +NV + ++  G H S +YP      P
Sbjct: 149 VNVSMNMTMHGYHPSSSYPANEISCP 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,349
Number of Sequences: 336
Number of extensions: 1594
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)