Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0041
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    25   0.68 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    25   0.68 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.3  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 228 KTREFSPKPGQRNLPCSSLRNQLTWKILGMFRPGCGIDGQCFR 100
           K+ +  P PG +NL  S  +  +  +I G F P  G+ G  FR
Sbjct: 3   KSTKIFPVPGDKNLHKSYSKMLILAQIFGFF-PVQGVRGPDFR 44



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 642 HVCGALSVSNKRVLLSVFITKI*IYIF*NLNTNYLHFRILIDSFNLYLWSNLK-LRLV 472
           H+C  L      ++L+ F+      IF    + YLH    +++   ++   L  LRLV
Sbjct: 276 HLCFLLDEKLSYIILTSFLNNFYFIIFQVFESFYLHKATTLETVYYFISLGLLILRLV 333


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 228 KTREFSPKPGQRNLPCSSLRNQLTWKILGMFRPGCGIDGQCFR 100
           K+ +  P PG +NL  S  +  +  +I G F P  G+ G  FR
Sbjct: 3   KSTKIFPVPGDKNLHKSYSKMLILAQIFGFF-PVQGVRGPDFR 44


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 167 FRKDEQGKFLWPGFGE 214
           F +++ GK +W GFG+
Sbjct: 276 FFEEKNGKVVWEGFGD 291


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 605 TLLFDTDNAPHTWVTG 652
           T+L + ++ P TWV G
Sbjct: 124 TVLVEVNSRPETWVLG 139


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 605 TLLFDTDNAPHTWVTG 652
           T+L + ++ P TWV G
Sbjct: 124 TVLVEVNSRPETWVLG 139


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 56  PFAMRPFXGYNFGDYLKHWPSMPQ 127
           P     + GY+ G Y  + P  P+
Sbjct: 78  PMHQNSYTGYHLGSYAANCPPSPK 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,801
Number of Sequences: 336
Number of extensions: 4104
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)