Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0004
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.58 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 532 LCMFSLKMQLVILHCIFYF 588
           LC++     L+IL CI+YF
Sbjct: 283 LCIYYFYCALIILLCIYYF 301



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 532 LCMFSLKMQLVILHCIFY----FSITTFHLTIRYTTFIMAVRD*YF 657
           LC+    + L+ L CI+Y    F I T HL + Y   I+ +   YF
Sbjct: 197 LCLDYFTLHLLFLPCIYYFYSAFIIFTIHL-LFYCVLIILLCIYYF 241



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = +1

Query: 532 LCMFSLKMQLVILHCIFY----FSITTFHLTIRYTTFIMAVRD*YFNC*SKYFY 681
           LC +      +IL C++Y    F I T HL      +   V   +  C   YFY
Sbjct: 98  LCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLC-IYYFY 150



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 532 LCMFSLKMQLVILHCIFYFSITTFHLTIRYTTFIMAV 642
           LC++   + L  L CI+YF       T+ +  F++ +
Sbjct: 131 LCIYYFVVPLFFLLCIYYFYCAFIIFTV-HLLFLLCI 166



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 533 CVCLVLRCSW*FYIASFIF 589
           CV ++L C + FY A  +F
Sbjct: 230 CVLIILLCIYYFYYAFILF 248


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 119 SGANTDPSKCSASQNLPPDRKRDPLRTSGEKISGLC-LWAKF 241
           +G   DP K SA +N P  +K   +R       GLC  + KF
Sbjct: 511 NGIKADPEKISAIRNFPVPQKTKHVRA----FLGLCNFYRKF 548


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 471 SSTILTFPYKVLMF 512
           SST+L FPY+ + F
Sbjct: 82  SSTLLKFPYRSIKF 95


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 598 TFHLTIRYTTFIMAVRD*YFN 660
           TFHLT+R T+ I    D + N
Sbjct: 641 TFHLTVRNTSIIKIPFDVFRN 661


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,531
Number of Sequences: 336
Number of extensions: 2931
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)