Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0003
         (838 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   1.7  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   6.9  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   6.9  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 505 LLSCRDYSXXXXXXTTCFSW 564
           LLSC+D+       TT  SW
Sbjct: 18  LLSCKDFDTLYRDCTTASSW 37


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 6   IIFYFWYLIRNNWNIF 53
           I+  FWY +  + NIF
Sbjct: 262 IVVIFWYTVNASTNIF 277


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 6   IIFYFWYLIRNNWNIF 53
           I+  FWY +  + NIF
Sbjct: 262 IVVIFWYTVNASTNIF 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,074
Number of Sequences: 336
Number of extensions: 2830
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)