Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30038
         (529 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.7  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 203 GDQAGFIRHSACDPRRRSRPFPREHPSQGQRPQG 304
           G Q G   H    P ++  P  ++ P+QGQ+P G
Sbjct: 191 GGQQGANMHQQGPPHQQ--PPIQQQPNQGQQPPG 222


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 203 GDQAGFIRHSACDPRRRSRPFPREHPSQGQRPQG 304
           G Q G   H    P ++  P  ++ P+QGQ+P G
Sbjct: 193 GGQQGANMHQQGPPHQQ--PPIQQQPNQGQQPPG 224


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 452 CTQSYCGHHHKPC*LLQCP 508
           CT  +C + +  C  ++CP
Sbjct: 693 CTTCFCENGNNKCFTMECP 711


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 82  LYKMVQRTFPP-HHRGTLKW 138
           LYK +++ FPP    G L W
Sbjct: 286 LYKKIKKAFPPLSLHGQLLW 305


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 468 VAIITNPVNFYSALLPL 518
           +++ TNP  F+  LLPL
Sbjct: 48  LSLPTNPAFFHPGLLPL 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,270
Number of Sequences: 336
Number of extensions: 2572
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)