Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30034
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.1  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 367 DDVKSYTYFVNTSIGDWTTTNKFHHKIFNPTSQYNK 260
           DD+ S  Y +  S  D  T      +IF    Q+N+
Sbjct: 180 DDILSQAYKLEASFDDLATYETDEVQIFIDVVQHNR 215


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 203 FVNVVNTTFATLKYVLAVEEEHL 135
           FVN  N +F +LKY +  E + +
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRM 321


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 431 MEGESMLHRP 402
           M+G+ M+HRP
Sbjct: 425 MDGQQMMHRP 434


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,365
Number of Sequences: 336
Number of extensions: 3223
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)