Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30027
         (323 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   1.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   9.9  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 286 TVLLPQMSYVSVRSLGQP 233
           TVL+PQ  + SV  LG P
Sbjct: 62  TVLIPQPLHPSVPRLGHP 79


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 280 LLPQMSYVSVRSLGQPLYNE 221
           L PQ++Y+S++    PL ++
Sbjct: 461 LTPQLNYISMKLQSFPLLSQ 480


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 213  PHVSKLTMRHSLSMNIMLSNFR*PDMLAVR 124
            P +SK   RH LS    + +   PD +A++
Sbjct: 1062 PFISKGAYRHHLSKMHFVKDGVIPDPVALK 1091


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,599
Number of Sequences: 336
Number of extensions: 1188
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6155018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)