Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30023
         (527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.41 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.41 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.7  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   6.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   8.9  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.9  

>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 360 LRDENGKPKIADEELQAVTNCTLTNALKQLASLVLLAEDIFSELTEQLQEITI 518
           L ++N +P + DE L  VT+       KQ+   +    +IFS++ E+ Q + I
Sbjct: 40  LSEQNNQP-VHDEHLFIVTHQAYELWFKQIIYELDSIRNIFSDVLEESQTLEI 91


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 360 LRDENGKPKIADEELQAVTNCTLTNALKQLASLVLLAEDIFSELTEQLQEITI 518
           L ++N +P + DE L  VT+       KQ+   +    +IFS++ E+ Q + I
Sbjct: 40  LSEQNNQP-VHDEHLFIVTHQAYELWFKQIIYELDSIRNIFSDVLEESQTLEI 91


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 271 RTAKLNVIPTSIQHIITKNV 212
           +T   +++PT + HI  +N+
Sbjct: 152 KTTSKSLVPTPVTHIFLQNL 171


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = -3

Query: 204 RHFELTDILTGELSLKPLFLIRHAVQVTY*LMRKYFNSDNKFRKVSKKL 58
           R FE++  + G L    L ++  ++ +     +++   +NKF+ + +KL
Sbjct: 71  RFFEISFEILGSLDSLILLMVLVSIILGSLKTKEWAKLNNKFQYIDEKL 119


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 421 QLVTACNSSSAIFGFP 374
           QL   C + + +FGFP
Sbjct: 241 QLCDMCGAINMLFGFP 256


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 76  SELII*VKIFSHQLIRNLNCMSY 144
           S + I +    H LIR  NC+ Y
Sbjct: 128 SGIFINLPFLEHNLIRLKNCVIY 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,914
Number of Sequences: 336
Number of extensions: 2570
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)