Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30030
         (349 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    26   0.13 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.2  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    20   6.3  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    20   6.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   8.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   8.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   8.3  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 25.8 bits (54), Expect = 0.13
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   LNILHLFKIKSIMYFLKYFIVVLVALSLMICS 102
           L I H  K +     LKYFI+ +  L+++  S
Sbjct: 26  LKIYHKEKYRKFCRILKYFIIAIYVLTILTSS 57


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 13  ILHLFKIKSIMYFLKYFIVVLVALSLMIC 99
           ++ LF +  I YF   FI+  V L  ++C
Sbjct: 137 VVPLFFLLCIYYFYCAFIIFTVHLLFLLC 165



 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 13  ILHLFKIKSIMYFLKYFIVVLVALSLMICSG 105
           +   + ++ I YF    I   V L  ++CSG
Sbjct: 47  VFKCYNLRRIYYFYCVSITFNVHLLFLLCSG 77



 Score = 21.4 bits (43), Expect = 2.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 16  LHLFKIKSIMYFLKYFIVVLVALSLMIC 99
           LHL  +  I YF   FI+  + L L  C
Sbjct: 204 LHLLFLPCIYYFYSAFIIFTIHL-LFYC 230



 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 40  IMYFLKYFIVVLVALSLMIC 99
           I YF   FI+  V L L++C
Sbjct: 238 IYYFYYAFILFTVHLLLLVC 257


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 35  NPLCTSLSISLLYW 76
           +P CT L + +L W
Sbjct: 108 SPACTELEVVMLDW 121


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 143 RVGKLLPKALKFSPQREQPMK 205
           R  ++ P  LKF P R  P K
Sbjct: 95  RNAEIYPDLLKFDPDRFLPDK 115


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 118 SDQPVHCKSSMTGL 77
           S  P+H  S MTG+
Sbjct: 119 SRNPIHTSSYMTGI 132


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 118 SDQPVHCKSSMTGL 77
           S  P+H  S MTG+
Sbjct: 352 SRNPIHTSSYMTGI 365


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 118 SDQPVHCKSSMTGL 77
           S  P+H  S MTG+
Sbjct: 352 SRNPIHTSSYMTGI 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,610
Number of Sequences: 336
Number of extensions: 1420
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)