Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30027
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    25   0.40 
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    25   0.40 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.70 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   6.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.7  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 420 AYFVSIKQYIFYFRRSQRNLIFNIKLYFLHF 328
           +Y + + Q +  F   QR ++  I+LY+L+F
Sbjct: 194 SYNIYVCQTVSNFEYFQRKILLMIQLYYLYF 224


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 420 AYFVSIKQYIFYFRRSQRNLIFNIKLYFLHF 328
           +Y + + Q +  F   QR ++  I+LY+L+F
Sbjct: 120 SYNIYVCQTVSNFEYFQRKILLMIQLYYLYF 150


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 528 PPPRMVASTRSVRTSSHISPV 466
           PPPR+ +   +VRT S I P+
Sbjct: 735 PPPRVESFAETVRTVSKIPPL 755


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 480 DWMSLPTGCSPP 515
           DW+S P+G  PP
Sbjct: 105 DWLSSPSGNVPP 116


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 420 AYFVSIKQYIFYFRRSQRNLIFNIKLYFLHFAGVD 316
           A+F+ +       R++  N  F  K YFL    +D
Sbjct: 30  AHFICLFPITINIRKNGLNYNFTKKCYFLRMVLID 64


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 155 PDAVCLCRIRRHWGTETPARAAA 87
           PDA+     RR W +   ARAA+
Sbjct: 113 PDAMGKWCPRREWSSPPDARAAS 135


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 155 PDAVCLCRIRRHWGTETPARAAA 87
           PDA+     RR W +   ARAA+
Sbjct: 269 PDAMGKWCPRREWSSPPDARAAS 291


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 284 NMFSCVTLPKSS*TPQNS 231
           N  SCV++P  + +PQ +
Sbjct: 30  NSMSCVSMPSMNCSPQGA 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,393
Number of Sequences: 336
Number of extensions: 3639
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)