Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00007
         (402 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.37 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   1.5  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   4.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    20   7.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    20   7.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   7.9  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 292 RLHNPAVAVKPSYI-PDDCRYI*PCYN 369
           +++    A  P Y  PDDC+Y   C N
Sbjct: 174 KVNETVAATHPRYADPDDCQYFYVCIN 200


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 256 EQRDSRRQPRVLRLHNPAVAVKPSYIPDDCRYI*PCYNKFYH 381
           +Q      P +   HNPA +  PSY         P YN +Y+
Sbjct: 9   KQEADSTSPLLTPPHNPAYSPPPSYCD-------PWYNPYYY 43


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  VIFKILNTEHEMYL-KLDVNVDSYGDRKTWGSNDSSEKRHTWYLYPVKVGDQQLFLIENR 191
           V+   + T H  ++ +L   VD YG    W ++  +   +T+ + PV V  +++ L E R
Sbjct: 122 VVTYSVKTGHPYFVNQLFSAVDPYGLVAQWATDALNPSVYTYEVSPVFVLMEEVVLREMR 181


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 38  RTRDVLETGRERGQLR*QEDLGIERF 115
           R +D+LE  R+RG L    ++GI+ +
Sbjct: 446 RWKDILEKPRQRGTLE-GNNMGIQPY 470


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 179 HREPGVPAGPEAGCERGLVRGPPCVGNNGTV 271
           H E G+PAG       G      C G   TV
Sbjct: 433 HFETGLPAGSYCDVISGNAENGSCSGKTITV 463


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 146 PSEGGRPTAVPHREPGVPAGPEAGCERGLVRGPP 247
           PS G R    PH   G P+G +        R PP
Sbjct: 52  PSVGLRQGIPPHHYGGPPSGGQPPQGMPYPRFPP 85


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 104 IERFQ*EETHLVFIPSEGGRPTA 172
           +ERF  +  H   + S   RP A
Sbjct: 226 VERFTSDRVHAALVTSPRARPLA 248


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +2

Query: 179 HREPGVPAGPEAGCERGLVRGPPCVGNNGTV 271
           H + G+PAG       G      C G   TV
Sbjct: 432 HLQTGLPAGSYCDVISGNAENGSCSGKTITV 462


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +2

Query: 179 HREPGVPAGPEAGCERGLVRGPPCVGNNGTV 271
           H + G+PAG       G      C G   TV
Sbjct: 433 HLQTGLPAGSYCDVISGNAENGSCSGKTITV 463


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 LFPTQGGPRTSPR-SHPASGPAGTPG 187
           L P +  P +SPR S P+S  +G+PG
Sbjct: 60  LDPGRKSP-SSPRISSPSSTKSGSPG 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,029
Number of Sequences: 336
Number of extensions: 2028
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)