Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03r
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    25   0.65 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    25   0.65 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.0  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 736 LQPVYRVLLDRRGCAERKGIQGYRVFQ 656
           + P  RV+    GC  R+G Q Y  FQ
Sbjct: 142 MSPFDRVVCGPNGCPRRRGRQTYTRFQ 168


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 736 LQPVYRVLLDRRGCAERKGIQGYRVFQ 656
           + P  RV+    GC  R+G Q Y  FQ
Sbjct: 201 MSPFDRVVCGPNGCPRRRGRQTYTRFQ 227


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +2

Query: 293 QHPYLLYRPLRHYFPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQV 439
           Q P  +Y+P+ +   +   S Y+  +  TH      I + +PE+   Q+
Sbjct: 344 QSPNQIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVVNPESPYPQI 392


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 389 QARLIPLGHPEAQEDQVFL 445
           Q  LIP G PE  + Q+F+
Sbjct: 584 QHMLIPKGTPEGMKSQLFV 602


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 110 VGSCSRLRDNHKPP 151
           +GSC  + D H PP
Sbjct: 657 LGSCGSMGDAHTPP 670



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 609 ASMP--WYTWNSVKPIPPWKTR*PWIPFLSAHP 701
           +S+P  +Y ++    IPP     P  P LS+HP
Sbjct: 215 SSLPSDFYRFSPTGLIPPHPGLSPHPPHLSSHP 247


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 110 VGSCSRLRDNHKPP 151
           +GSC  + D H PP
Sbjct: 549 LGSCGSMGDAHTPP 562



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 609 ASMP--WYTWNSVKPIPPWKTR*PWIPFLSAHP 701
           +S+P  +Y ++    IPP     P  P LS+HP
Sbjct: 107 SSLPSDFYRFSPTGLIPPHPGLSPHPPHLSSHP 139


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 696 HPRRSRRTRYTGCSD*GG 749
           +P +    +YTGCSD  G
Sbjct: 17  YPFQGTTYKYTGCSDNDG 34


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 614 HALVYLEFRQAHPALED 664
           H LVY +    HP+ ED
Sbjct: 320 HRLVYFQNEYEHPSEED 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,569
Number of Sequences: 336
Number of extensions: 3363
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)