Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a01f
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    25   0.34 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   5.6  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   5.6  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   5.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.3  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.7  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 139 TVNNVRSNGSGEEEIRWKRRVGARRYHLTSLYARRFATG 255
           TV+ V SN  G + IR+K+ +G +     +LYA + A G
Sbjct: 273 TVSQV-SNWFGNKRIRYKKNIG-KAQEEANLYAAKKAAG 309


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 560 QSFVVLRIWPPQCQCLS 510
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 560 QSFVVLRIWPPQCQCLS 510
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 560 QSFVVLRIWPPQCQCLS 510
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 560 QSFVVLRIWPPQCQCLS 510
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 309 FASIKMLLKIKHKKSNILQSKRLLCER 389
           F +I  L +  H K +I + KRL C +
Sbjct: 209 FVAITKLEQWNHSKVHIREDKRLTCPK 235


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 560 QSFVVLRIWPPQCQCLSIMT*CVSCRLHDRQLVCG*LVLN 441
           Q+++ + IW P C  LS         ++D  L+   L LN
Sbjct: 228 QAWISVHIWSPNCDKLSSTEQLFIRPMYDAFLIDQSLALN 267


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 560 QSFVVLRIWPPQCQCLSIMT*CVSCRLHDRQLVCG*LVLN 441
           Q+++ + IW P C  LS         ++D  L+   L LN
Sbjct: 461 QAWISVHIWSPNCDKLSSTEQLFIRPMYDAFLIDQSLALN 500


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 560 QSFVVLRIWPPQCQCLSIMT*CVSCRLHDRQLVCG*LVLN 441
           Q+++ + IW P C  LS         ++D  L+   L LN
Sbjct: 461 QAWISVHIWSPNCDKLSSTEQLFIRPMYDAFLIDQSLALN 500


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 458 HRLAVDHAADKKHIKSLCSNIDTVE 532
           H L    + + + +K+ CS++D+V+
Sbjct: 260 HHLVNPQSLNHQEVKAECSDLDSVD 284


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 268 ENPTRTQQGTRDSPSPASK 324
           E PT +     +SP+PAS+
Sbjct: 218 EFPTTSSSSALESPNPASR 236


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 268 ENPTRTQQGTRDSPSPASK 324
           E PT +     +SP+PAS+
Sbjct: 7   EFPTTSSSSALESPNPASR 25


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 268 ENPTRTQQGTRDSPSPASK 324
           E PT +     +SP+PAS+
Sbjct: 7   EFPTTSSSSALESPNPASR 25


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 268 ENPTRTQQGTRDSPSPASK 324
           E PT +     +SP PAS+
Sbjct: 218 EFPTTSSSSALESPDPASR 236


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +1

Query: 280 RTQQGTRDSPSPASKCY*RSSTRNRISYKANG 375
           +++ G + +P P +     +  RNR+    NG
Sbjct: 40  KSKPGGKTAPQPVAVARRNARERNRVKQVNNG 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,116
Number of Sequences: 336
Number of extensions: 2432
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)