Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a02r
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.38 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.38 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 278 NVIILHYIGDLTIPCFVKTQNSIPSFSMRRR*YWFYGFCTNFYCLPCRHFRSE 436
           N ++ H    L +P    + N I +  + ++ Y  Y F TNF  L     RSE
Sbjct: 389 NTVLGHQNPYLALPKTDSSDNRILNNLLDKKPYSTYKFPTNFDALIVNEMRSE 441


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 278 NVIILHYIGDLTIPCFVKTQNSIPSFSMRRR*YWFYGFCTNFYCLPCRHFRSE 436
           N ++ H    L +P    + N I +  + ++ Y  Y F TNF  L     RSE
Sbjct: 281 NTVLGHQNPYLALPKTDSSDNRILNNLLDKKPYSTYKFPTNFDALIVNEMRSE 333


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 113 EVGHNVPLLFPYVHRLFQLHLTLNN 187
           E GHN PL  P     +Q  L + +
Sbjct: 288 ETGHNAPLYSPSSDSQYQKQLNVEH 312


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 MAYFKPTEEPKPKNFLSKFFS 62
           M +FK +++P   +FL  FF+
Sbjct: 153 MCFFKSSKKPAFSHFLIVFFT 173


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 MAYFKPTEEPKPKNFLSKFFS 62
           M +FK +++P   +FL  FF+
Sbjct: 153 MCFFKSSKKPAFSHFLIVFFT 173


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 MAYFKPTEEPKPKNFLSKFFS 62
           M +FK +++P   +FL  FF+
Sbjct: 153 MCFFKSSKKPAFSHFLIVFFT 173


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 MAYFKPTEEPKPKNFLSKFFS 62
           M +FK +++P   +FL  FF+
Sbjct: 153 MCFFKSSKKPAFSHFLIVFFT 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,768
Number of Sequences: 336
Number of extensions: 2493
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)