Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A18
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.0  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   6.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.6  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 339 AEVRSTTSTSSGWPLTWSGTRPA*SVRNAGSSSTN 443
           A ++S+ S+ S  P T S  RPA + RNA   + N
Sbjct: 239 AGLQSSGSSRSHQPATKSKPRPAPASRNAPEPADN 273


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 455  STCRIRRGTAGIPDTLGRPRATPSQGPPGGCTGRGSDL 342
            S CR     A   D  G PR+T     PGG  G  S +
Sbjct: 929  SPCRNSASPAS-SDRSGTPRSTNGDRKPGGSLGALSSM 965


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = +2

Query: 389 EWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFGTK---CDKCGAXFSKNDFV- 556
           +W+ + +  +E ++     C  F+ + K + +       G+K   C+KC         + 
Sbjct: 217 QWNHSKVHIREDKRLTCPKCP-FITEYKHHLEYHLRNHAGSKPFQCNKCDYTCVNKSMLN 275

Query: 557 --MRAKTNIYHIDCFXC 601
             M++ +N+Y   C  C
Sbjct: 276 SHMKSHSNVYRYSCRDC 292


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 234 SPPPPPLAITITDDHTEPTFEVSRKTTSLCRVT 136
           S PPPP  I+     ++   ++ +  T+L  +T
Sbjct: 328 SSPPPPYQISAQPTPSQSPNQIYQPVTNLTNLT 360


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 512 KCDKCGAXFSKNDFVMRAKTNIYHIDCFXC 601
           KCD      S  +  M++ +N+Y   C  C
Sbjct: 21  KCDYTCVNKSMLNSHMKSHSNVYRYSCRDC 50


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 469  KDLLQXXLYYIIRHEMRQMRRVLQ*KRLRD 558
            KDLL   LY I  ++  + R     K LRD
Sbjct: 1237 KDLLDKYLYPIDENKEEKARIAADLKELRD 1266


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 469  KDLLQXXLYYIIRHEMRQMRRVLQ*KRLRD 558
            KDLL   LY I  ++  + R     K LRD
Sbjct: 1237 KDLLDKYLYPIDENKEEKARIAADLKELRD 1266


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,104
Number of Sequences: 336
Number of extensions: 3370
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)