Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A11
         (366 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   1.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   1.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   2.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   3.9  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   3.9  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   5.2  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 27  FYRNRLDILIKNA*FSKIYRYKYAYKWHKSEK 122
           F R+ +D+L++ A F    R     +W + E+
Sbjct: 65  FLRSSVDVLLQEAVFEGTNRKNRVLQWREPEE 96


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 7/20 (35%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 130 PYVSSGI-PSLDHIVGGGIP 186
           PY ++ + P+ +H++GG +P
Sbjct: 51  PYHANHVNPTANHVMGGAVP 70


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 152 GIPEDTYGRLFFTFVPFI 99
           GI  DT  R+F   +PF+
Sbjct: 74  GITTDTIDRVFTVAIPFV 91


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 35  SVKYCLSIKIH 3
           + KYC S+KIH
Sbjct: 295 ATKYCHSLKIH 305


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
          protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 35 SVKYCLSIKIH 3
          + KYC S+KIH
Sbjct: 53 ATKYCHSLKIH 63


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = +1

Query: 28  FTEIGLIY**KMRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVG-GGIPAGS-IF 201
           ++ +GL     +R   +++D+     GT  K N   V +  P+L  ++  GG   GS  +
Sbjct: 58  YSFVGLQADGNVRHLDEYLDVDA---GTIAKLNALKVKN--PNLKTLIAIGGWNEGSETY 112

Query: 202 VVGS*ISFKIA*YLRAKTNLINKYGYE 282
              +  + K A ++++  NL+ K+G++
Sbjct: 113 SQVAADAAKRATFIKSALNLVQKWGFD 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,206
Number of Sequences: 336
Number of extensions: 1506
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)