Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0017
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.1  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 63  AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSP 188
           A    T  T+++  + S       V  A P G+P P  + SP
Sbjct: 194 ASRTTTSPTKVKASKASPAAAPRSV--ATPTGIPTPSTSASP 233



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 190 SGESARRGTGTPTGSASITSYARPP 116
           S  +A R   TPTG  + ++ A PP
Sbjct: 210 SPAAAPRSVATPTGIPTPSTSASPP 234


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 425 SRLKDHLEGVEKTRLTLEQQTAEVYKAIKIR*PQLP 532
           S++K H++G+  ++L +        ++  +  PQLP
Sbjct: 232 SKIKKHIDGMAASKLNVLHWHITDSQSFPLELPQLP 267


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 472 PGTADRGSVQGHQDKMTTAADKRRR 546
           PG ADRG     +DK      + RR
Sbjct: 147 PGAADRGGSFSDKDKFFYFVGELRR 171


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 530 PTSGDENLKKMIERLREHEXQVSQGPRRQP 619
           P +G  +L  +  R R ++  VSQ P R+P
Sbjct: 237 PGNGPLDLS-VSSRKRSNDDSVSQPPNRKP 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,689
Number of Sequences: 336
Number of extensions: 2035
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)