Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0009
         (535 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 413 GACRVWTGSGCVRCRVWSMFVRYVR 487
           G   +  G+GCVR ++  ++++++R
Sbjct: 744 GTLMMVLGTGCVRIKITGVWLKFLR 768


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 453 HRTHPLPVQTRHAPVLRANPYS 388
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 175 RIPWNSNAQAEKKTLPGPLG 116
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 129 PDLSAASSGHFGLPRRTLVFKDEG 58
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25



 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 254 FQGPQRVSGHRRKC 213
           F GP R++   R+C
Sbjct: 602 FHGPHRLAARSRRC 615


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 253 NSGEGCTWRCRAGSYPYPQQVS 318
           N G+G + +C      YP  +S
Sbjct: 616 NEGDGVSVQCTVSKGDYPLNIS 637


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 254 FQGPQRVSGHRRKC 213
           F GP R++   R+C
Sbjct: 494 FHGPHRLAARSRRC 507


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 431 SKPDTPRSSEP 399
           SKP TP S EP
Sbjct: 227 SKPGTPPSGEP 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,562
Number of Sequences: 336
Number of extensions: 2940
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)